| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_25111 |
|---|
| Symbol | |
|---|
| ID | 4777702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9303 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008820 |
|---|
| Strand | - |
|---|
| Start bp | 2207734 |
|---|
| End bp | 2209257 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640088032 |
|---|
| Product | retinal pigment epithelial membrane protein |
|---|
| Protein accession | YP_001018507 |
|---|
| Protein GI | 124024200 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCAGCC TTGCAGTGAG CACAGTGAGC GATAGCCCTT CAACAGTGTC CGCGACCTCA
ATAGATAGGC CCGGCGGGTT TGATCGGGAC GACTGGGCAA GTGGTTATTG CAATGTTGAG
CAAGAGCTCA ATGCTGTGTC TTTACGTCCC CTGAGGGGAC AGATTCCAGC TGAACTGCAA
GGCAGCCACT ATCGCAACGG TCCAGGCAGG TTTGAACGCG ATGGGCAATG GGTGCATCAC
CCCTTTGATG GCGACGGCAT GATCACTGCT GTGCGATTCA GCGATAGCAA GGCCACGCTG
AGTAATCGCT TTGTGCGAAC GAAATACTGG CAGGAAGAGG AAAAGGCTGG TCGCTTCCTC
TATCGGGGGG TGTTTGGCAC GCAGAAGCGT GGTGGGGCGA AGGCGAATGC TTTTGACGTG
CGTTTCAAGA ACATTGCCAA TACCCAAGTG GTTCAACTTG GTGATCAGTT ACTGGCTCTT
TGGGAGGCGG CTGGTCCGCA CGCGCTTGAC CCTGTCAGCT TGGAAACTCA TGGGCTTTCG
AGTCTCAATG GGGTGCTGAA GCCTGGAGAG GCTTTTAGCG CTCATCCCCG CTTCGATCCT
GGCCACCATG GCGAACCTCG CATGGTCACC TTTGGTGTGA ATACAGGGCC GACTAGCAAG
GTCCGGCTGA TGGAGTTTGC CACTCAGGGG CCAGATGCGG GACGACTCAT CAGTGATCGC
ACAGACAGTT TTAAGGGTTT TGCTTTTCTG CATGACTTCG CGATTACTCC CAACTGGACG
CTCTTTTTGC AGAATGCGAT CAACTTCAAT CCGTTGCCGT TTGTGCTGGG TCAGAAGGGT
GCGGCGCAAT GTTTAACGTC TAAGCCTGGA GGCCAGGCAA AGTTTTGGTT GATTCCTCGT
GATTGCGGCA CTTTTGCTGG GCAGCCGCCG CGCATCTTTG ATGCTCCCGA TGGTTTTGTT
TTTCACCATC TCAATGCTTG GGAGGAGGGG GATGAGTTGG TTTTGGAGAG CATTTACTAC
AACGATTACC CCTCGATTGA TCCCGGCGAG GACTTCCTCT CGATGGACTT TGACTTTTTC
CCTGAGGGTC GATTAGAGCA GTGCCGCATC AATCTTTTGG GGAAAGGAAT TGAAACCAAG
CGCTTTAGTG AGCGTTGTTG TGAATTTGCG ATGGTCAATC CACGCCGAGA AGGGTTGTCG
GCTCGTTATG CATGGATGGC TGTGGCAGAG CGTGAAACCG GCTATGCCCC CCTACAGGCG
ATCAAGAAAC TGGATTTGAG CAATGGTGAT CAATGCTTAT GGAGTGCAGC GCCGCGTGGA
TTTGTCAGTG AGCCATTGAT GGTGCCACGC CCTGGCAGTG AAGCTGAGGA TGATGGTTGG
CTGTTGGTTT TTGTATGGAA TGGAGAGCGT CGTGCCAGTC AGTTGTTGAT TTTGAATGCA
AACGATTTAA GCGAGCAGGC AGTGCTTGAG ATGCCTATAA CCATTCCATA CGGATTACAT
GGCAGCTGGG TTGCTGCTGA TTGA
|
|---|
| Protein sequence | MISLAVSTVS DSPSTVSATS IDRPGGFDRD DWASGYCNVE QELNAVSLRP LRGQIPAELQ
GSHYRNGPGR FERDGQWVHH PFDGDGMITA VRFSDSKATL SNRFVRTKYW QEEEKAGRFL
YRGVFGTQKR GGAKANAFDV RFKNIANTQV VQLGDQLLAL WEAAGPHALD PVSLETHGLS
SLNGVLKPGE AFSAHPRFDP GHHGEPRMVT FGVNTGPTSK VRLMEFATQG PDAGRLISDR
TDSFKGFAFL HDFAITPNWT LFLQNAINFN PLPFVLGQKG AAQCLTSKPG GQAKFWLIPR
DCGTFAGQPP RIFDAPDGFV FHHLNAWEEG DELVLESIYY NDYPSIDPGE DFLSMDFDFF
PEGRLEQCRI NLLGKGIETK RFSERCCEFA MVNPRREGLS ARYAWMAVAE RETGYAPLQA
IKKLDLSNGD QCLWSAAPRG FVSEPLMVPR PGSEAEDDGW LLVFVWNGER RASQLLILNA
NDLSEQAVLE MPITIPYGLH GSWVAAD
|
|---|
| |