Gene P9303_23721 details

Gene Information

• Locus tag: P9303_23721
• Symbol: rne
• ID: 4777752
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9303
• Kingdom: Bacteria
• Replicon accession: NC_008820
• Strand: -
• Start bp: 2089136
• End bp: 2091079
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640087892
• Product: ribonuclease E/G
• Protein accession: YP_001018370
• Protein GI: 124024063
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 9
• Fosmid unclonability p-value: 0.134422
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCCAGC AAATTGTCAT CTCTGAGCAG CTGCGCATCG CAGCTTTGCT CACAGATGAG 
CGAGTCGATG AGTTGATCGT CGCTCAGGGT CGATACCAGA TCGGAGATGT CTACCTCGGC 
ACAGTCGAGA ACGTTCTCCC GGGAATTGAT GCAGCTTTTG TGAATATTGG GGAAAGTGAG 
AAAAATGGTT TTATCCATGT CACTGATCTG GGCCCTCTGC GTTTGAAGAA GGGTGCTGCA 
GGGATTACCG AGCTGCTGGA GCCCCGTCAG CAGGTGTTGG TACAGGTGAT GAAGGAGCCA 
ACAGGGTCTA AGGGGCCAAG GCTTACTGGC AACCTGGCGC TGCCTGGTCG CTACTTGGTG 
CTGCAGCCCC ATGGCCAGGG GGTGAACATC TCTCGCCGGA TTAATTCCGA AGGGGAACGC 
AATCGCTTGC GAGCACTTGG CGTACTAGTG AAGCCGCCTG GTGCTGGCCT GTTGGTTCGC 
ACCGAAGCCG ATGGCATTAG TGAAGATCTG CTGATCGATG ATCTGGAGGT TTTACTCAGG 
CAATGGGAAG CGATCCAGCA GGCGGCAGAC AATGCTCTAC CACCGGTACT GCTCAATCGC 
GATGAAGATT TCATTCATCG CGTTTTAAGA GATCACGTCG GTCCAGATCT TGTGAGAGTA 
GTGGTCAATG ATGCCGCTGC CATTGAGCGT GTGAGCAGTT TCCTTGGCCA GGAAGGGCCA 
AATGTATTAG TTGAGGCCCA TAACGAATCC ACCGAACTTC TTGAGCATTA CCGAGTTAAT 
GCGGCCATCC GAGATGCTCT CAAGCCCAGG GTAGATCTGC CATCCGGTGG CTACGTGATC 
ATTGAGCCGA CGGAGGCACT CACTGTTATT GATGTCAATT CAGGCTCGTT CACTCGTTCG 
GCCAATGCTC GTCAGACGGT GCTCTGGACC AATTGTGAGG CAGCTATTGA GATTGCCCGC 
CAGCTGAAGC TTCGCAATAT TGGCGGTGTG ATCATCATCG ACTTCATCGA CATGGAGTCG 
CGCCGTGATC AGTTGCAGTT GCTGGAGCAT TTCACAGCAG CCGTTCGCGA TGACGCTGCT 
CGTCCTCAGA TTGCCCAGTT GACTGAACTG GGGCTGGTGG AACTCACTCG TAAGCGTCAG 
GGGCAGAACA TCTATGAATT GTTTGGCAGG GCTTGTCCTG CCTGTGGTGG CCTTGGCCAT 
GTAGCGGTAC TACCTGGCAA AGATCTGCTA CAGCCACTTG CTATGGCGAC TGGATTGGTG 
AGATCAGCAG CCGCTGCTCG AGCTGAAGCG CAGGTGCCAG CGGATGGCGG GAATGGTCGC 
CGTAGGCGTG GTGGGCGCAT TCGTACCGGT GCTGTTGAGC TGCCTGCACA TACGCCTCCT 
TCTGATGTGG CGAATGGAGT TGAGTCAACC ACGTCTGTTG AACCTGAGAG ACAAGAGCCT 
TCGGCCTCGT CTGAGGGTGT TATTCGTCGC CAGGAACCTG AATTGGTTGC TGTTCCAATG 
GATTCAGGGC AGGAGGAGGT GTTTGCTTGG CTTGGATTAA ACCCTTTGCT TTTGATTGAG 
CCACCTCCAG AGAATGACAA CCTTCTGGTT CGCGTGGTTC GGCCTGGGGA AGATGCTGAG 
TCTGTCCTTG AGGAGGCTCG TGAGCAGCTT TCAGCTAGTT CCAATCGGCG TCGGCGTCGG 
GGACGAGGTG GTGGTCGAGG GGCCGGCCGT GGTGCTCCCG AAGCCAGTGT CGAAACCCCT 
TCATCCAATG GCACAGAGGT CGTTGTCCAG CAAGCCAAGG TTGTCGCAAA GAATGAGCCC 
CTAAGTGTTC AAATCACTCC TCTTGAGGTT GATCATTCAT CGAGTAGCGC TTCTGTAGAA 
ACCGTTTCTT CAATTTCTGA GCAGCAGGAG AGTGAACCCG AGGATCCGCG CCGCCGCCGC 
CGCCGCTCCT CTGCCGCAGG CTGA 

 

Protein sequence

MPQQIVISEQ LRIAALLTDE RVDELIVAQG RYQIGDVYLG TVENVLPGID AAFVNIGESE 
KNGFIHVTDL GPLRLKKGAA GITELLEPRQ QVLVQVMKEP TGSKGPRLTG NLALPGRYLV 
LQPHGQGVNI SRRINSEGER NRLRALGVLV KPPGAGLLVR TEADGISEDL LIDDLEVLLR 
QWEAIQQAAD NALPPVLLNR DEDFIHRVLR DHVGPDLVRV VVNDAAAIER VSSFLGQEGP 
NVLVEAHNES TELLEHYRVN AAIRDALKPR VDLPSGGYVI IEPTEALTVI DVNSGSFTRS 
ANARQTVLWT NCEAAIEIAR QLKLRNIGGV IIIDFIDMES RRDQLQLLEH FTAAVRDDAA 
RPQIAQLTEL GLVELTRKRQ GQNIYELFGR ACPACGGLGH VAVLPGKDLL QPLAMATGLV 
RSAAAARAEA QVPADGGNGR RRRGGRIRTG AVELPAHTPP SDVANGVEST TSVEPERQEP 
SASSEGVIRR QEPELVAVPM DSGQEEVFAW LGLNPLLLIE PPPENDNLLV RVVRPGEDAE 
SVLEEAREQL SASSNRRRRR GRGGGRGAGR GAPEASVETP SSNGTEVVVQ QAKVVAKNEP 
LSVQITPLEV DHSSSSASVE TVSSISEQQE SEPEDPRRRR RRSSAAG