| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_14371 |
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| Symbol | mfd |
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| ID | 4778142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9303 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008820 |
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| Strand | - |
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| Start bp | 1231596 |
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| End bp | 1235177 |
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| Gene Length | 3582 bp |
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| Protein Length | 1193 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640086946 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_001017448 |
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| Protein GI | 124023141 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCTGA GCTCATTAGT TCGTCAGCTT CAGATGTCGA CTCTCACTGG TGAGTTGGTG
GACAGAAGTA ATCGAAGCGA TCGCTTGCTG ATGCGTGGAG CCGGGCGAGT GGGGCGTGCA
TTAATTGCAA GTGCAATAGC TCGTCATCAG AGCCGTCCAC TGGTTGTGAT CGTGCCAACA
CTAGAAGAGG CGAATCGCTG GTCTTCGCTG CTTGCCTTGA TGGGTTGGTC GCATAATCAT
CTCTACCCAA CAAGTGAAGG ATCACCTTAT GAGCCATTTG ACCCAACAAC AGAAATCGTC
TGGGGCCAAT TGCAGGTTCT AAGTGAACTA CTTGGTGAAT CAACAAGAAG GTGGGATCGA
GCCATAGTGG CCACAGAAAG AGCTTTACAA CCACATCTAC CTCCTGTTGA GGCACTCGCA
TCACAGTGTG AAATCCTCAG TCGTGGAGAG AATATTGACC TGGAGAGCTT AGCCAGTACT
CTTACCAAGC TTGGATACGA TCGAGTTACA GCTGTTGATC AGGAAGCTAC CTGGAGTCGT
CGTGGTGACA TTGTTGATAT ATTTCCAGTA AGCAGTGAAT TGCCAGTTCG CCTCGAGTTA
TTCGGCGATG AACTTGACAA ATTAAGAGAA TTCGACCCAG TCACTCAACG TTCCCTGGAT
GAAGTTAATG AACTTTGCCT AACTCCTTCA GGGTTTAGTC CATTAATTGC TCATCAACTA
CGACAGTCCA TGCCCGATGG GCTTGACCGT CTTGTTAGTG AGGAGACTTT AGATCAACTA
TTCGAAGGTT CTACACCTGA TGGTATAAGA AGGTTAATGG GAATTGCATG GAACAAACCT
GCCTCGCTAC TTGACTACAT TCCTGCCAAC TCCTTTATCG CAATAGATGA GAAGCGTCAT
GGCTCTGCAC ATGGAAAGCT ATGGCTTCAA CATGCAGAAG AACATCACAA TGATGTCGGT
CAATCAATGG GCTTGTCCAT TGATGAACAA AAGAAGTATT GGCCTCCATT GCTTCATCGC
AGCATCGGAG AAAGCTATGC AAACACAGAT GGCTTTGCCG GTATTGATCT TGCTGAACTC
CATGAAGATG ATGGTTATGC AAATAGTTTT GATCTTGCCA GTCGCCCAAT TCCGGCCAAC
CCAAACCAAT TCGGAAGGTT AGGAGAGCAA ATCAAAAATT ATCAAAAAGC ACATCATCCC
GTTTGGCTTT TGTCAGCGCA ACCAAGCCGT GCTGTGGCTC TTCTTGAGGA ACATGACTGC
ATCACACGCT TCGTCCCAAA CGCTAAAGAT CACCCAGCCA TTGAACGTTT GCTCGAGCAA
AACACGCCAG TAGCATTAAA AACAAGTGGT TCTGTGGATT TAGAGGGGCT GATCTTGCCA
GCCTGGCGAG TTGTTTTGAT GACTGACCAT GAATTTTTTG GTCAAAAAAA CCTTGGCTCT
ACCGGTTATG TTCGACGACG ACGACGGGCC GCGAGTCGTA CGGTTGACCC CAACAAAATG
TGCTCTGGGG ACTTCGTCGT ACATCGCAAT CACGGCATCG GTCGTTTTCT GAAATTAGAA
AAACTGGCCA TCAGTGGTGA GGTCCGTGAC TATTTGGTTA TCCAATATTT GGATGGAACA
CTCAGCGTGG CCGCCGATCA GCTCGGCAGC CTTGGTCGCT ATCGATCAAC AAGTGAATCG
CCACCAAAAC TCAATCGCAT GGGAGGAACA GCGTGGCAAA AAATTAAAGA GCGAACCCGA
AAGTTAGTTC GCAAAGTTGC GATGGATCTG GTCAAGCTCT ATGCAGAGCG ACTCCAGGCC
CCTGGATATG CCTTCCCACC AGATGGACCT TGGCAGATTG AACTAGAAGA ATCATTTCCC
TATGAACCAA CACCTGATCA AGTCAAGGCA GTCGTTGATG TAAAACGCGA TATGGAAGCA
GCACAACCTA TGGATCGGCT TGTGTGCGGA GATGTTGGTT TCGGAAAAAC GGAAGTAGCA
ATACGAGCCA TCTTCAAAGC AATCACGTCT GGACGCCAGA TAGCCATGCT TGCCCCCACA
ACAGTGCTAG CCCAACAACA CTGGAGAACA CTTTCGGACC GCTTCGCTCC CTACCCAATC
AAGGTCGCTT TACTGAACAG ATTCAGAACA AGCTCAGAAC GAAAATCAAT ACTTAATGGC
CTCAAAGAAG GGACAATCGA TGCAGTTGTC GGTACCCACC AGCTACTCAG TAAAAACACA
ACATTCCAAA AACTAGGGTT GTTGGTTGTT GATGAGGAAC AGCGTTTTGG AGTCAATCAA
AAGGAAAAGA TCAAAGTTCT TCGTAAGGAT GTAGATGTTT TGACCCTTTC AGCTACACCA
ATTCCGCGGA CCTTATACAT GAGCCTTTCA GGGGTAAGGG AAATGAGTCT GATCACAACC
CCTCCGCCAT TGCGCCGTCC TATCAAAACC CACCTAGCTG CTTTTGATGA AGAAGCAGTT
CGTAGTTCTA TCCGCCAGGA ACTTGATCGA GGCGGACAGG TGTTCTATGT CGTTCCACGT
GTTGAGGGTA TTGAAGATGT AGCCAGTCAA CTTCAACAGA TGCTGCCCGA TTTGAAGTTG
TTGGTAGCCC ATGGTCAGAT GGCAGAAGGC GAACTTGAGA GCTCGATGGT CGCCTTTAAT
GCAGGGGAGG CCGACTTGAT GCTATGCACC ACGATCGTTG AAAGTGGCCT CGATATCCCA
CGTGTGAACA CTATCCTCAT TGAGGATGCT CATAAATTTG GACTAGCACA GCTCTACCAA
CTACGTGGAC GTGTGGGTAG AAGCGGTGTT CAAGCGCATG CATGGTTGTT CTATCCGGGT
GACGCATCCC TGAGTGATGC CGCTAGACAA CGCCTAAGAG CAATCCAAGA ATTTGCACAG
CTAGGCAGTG GCTATCAACT AGCCATGCGA GACATGGAAA TCCGTGGTGT GGGAAACCTT
CTCGGGGTTG AACAAAGCGG ACAAATGGAA ACCATTGGTT TCGATCTTTA CATGGAAATG
TTGCAGGAAT CACTTGCTGA AATCCAAGGA CAGGGCATTC CATCTGTAGA TGACACTCAA
ATCGATCTAC CGGTAACAGC ATTCGTGCCA GCGGAATGGA TTGTTGATGG TGACGAAAAG
ATCGCTGCTT ACCGAGCTGC AGCAAATTGT GCTTCTCATG AATCACTGAT TGAGTTGGCA
GCTAGCTGGA CAGACCGCTA CGGAGCCATT CCTGGTCCTG TGCAATCACT TCTTCAACTC
ATGGAGCTCA AACTCTTAGC TCGTCGCTGC GGGATCTCGA GAATTAAACC AGAAAAGCCA
AATATTGCGA TGGAAACTCC GATGGAGGAG CCCGCCTTCC GGCTACTTAG GCAAGGTTTA
CCGCAACACC TGCACGGCCG ACTGATTTAC CAGACTGGAA GTGGAAATAA AGCCAAGGTG
CTGGCAAGAG GTCTAAGCGT CTTGCCTATG GAAAAACAGC TAGAACAACT GATGGAGTGG
TTGCGTCTCA TGGCCACTCA GATTCCTTGC GAGGATGGAT TAACTGCAAG TCAGCAAAAG
CAGCAAGCCG TAGAGCGAGA TGAGGCCGTC ATTACTCCCT AA
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| Protein sequence | MPLSSLVRQL QMSTLTGELV DRSNRSDRLL MRGAGRVGRA LIASAIARHQ SRPLVVIVPT
LEEANRWSSL LALMGWSHNH LYPTSEGSPY EPFDPTTEIV WGQLQVLSEL LGESTRRWDR
AIVATERALQ PHLPPVEALA SQCEILSRGE NIDLESLAST LTKLGYDRVT AVDQEATWSR
RGDIVDIFPV SSELPVRLEL FGDELDKLRE FDPVTQRSLD EVNELCLTPS GFSPLIAHQL
RQSMPDGLDR LVSEETLDQL FEGSTPDGIR RLMGIAWNKP ASLLDYIPAN SFIAIDEKRH
GSAHGKLWLQ HAEEHHNDVG QSMGLSIDEQ KKYWPPLLHR SIGESYANTD GFAGIDLAEL
HEDDGYANSF DLASRPIPAN PNQFGRLGEQ IKNYQKAHHP VWLLSAQPSR AVALLEEHDC
ITRFVPNAKD HPAIERLLEQ NTPVALKTSG SVDLEGLILP AWRVVLMTDH EFFGQKNLGS
TGYVRRRRRA ASRTVDPNKM CSGDFVVHRN HGIGRFLKLE KLAISGEVRD YLVIQYLDGT
LSVAADQLGS LGRYRSTSES PPKLNRMGGT AWQKIKERTR KLVRKVAMDL VKLYAERLQA
PGYAFPPDGP WQIELEESFP YEPTPDQVKA VVDVKRDMEA AQPMDRLVCG DVGFGKTEVA
IRAIFKAITS GRQIAMLAPT TVLAQQHWRT LSDRFAPYPI KVALLNRFRT SSERKSILNG
LKEGTIDAVV GTHQLLSKNT TFQKLGLLVV DEEQRFGVNQ KEKIKVLRKD VDVLTLSATP
IPRTLYMSLS GVREMSLITT PPPLRRPIKT HLAAFDEEAV RSSIRQELDR GGQVFYVVPR
VEGIEDVASQ LQQMLPDLKL LVAHGQMAEG ELESSMVAFN AGEADLMLCT TIVESGLDIP
RVNTILIEDA HKFGLAQLYQ LRGRVGRSGV QAHAWLFYPG DASLSDAARQ RLRAIQEFAQ
LGSGYQLAMR DMEIRGVGNL LGVEQSGQME TIGFDLYMEM LQESLAEIQG QGIPSVDDTQ
IDLPVTAFVP AEWIVDGDEK IAAYRAAANC ASHESLIELA ASWTDRYGAI PGPVQSLLQL
MELKLLARRC GISRIKPEKP NIAMETPMEE PAFRLLRQGL PQHLHGRLIY QTGSGNKAKV
LARGLSVLPM EKQLEQLMEW LRLMATQIPC EDGLTASQQK QQAVERDEAV ITP
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