| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_10511 |
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| Symbol | mfd |
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| ID | 4779323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 968831 |
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| End bp | 972334 |
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| Gene Length | 3504 bp |
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| Protein Length | 1167 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 640084330 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_001014874 |
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| Protein GI | 124025758 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00605187 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCTTTAG AGTCAATAGC AAAGTATTTA GAAAAGCATC ATTTAACAAC TGAGTTGATT
GAACGAACAA ATAGAGAAGA AAGATTAACA TTAACAGGAG CATCACGGAC AGCAAAGGCA
TTAATAACAA CTTCACTTGC TAAAAATGAG TCCAAAAGAT TATTAGTAAT TGTTCCAACA
TTAGAAGAAG CAACTAGATG GTATCCCCTT GTAAAAGACT GCGGTTGGAC TAAGACATGT
TTATATCCAA CAAGTGAAGT CTCACCATAT GAAACTACTC AAGTTACTTC AGAAATCATT
TGGGGTCAAT TACAAGTACT AAGCGATATA TTGGAATTAA AAGATGATGA GAATATCGCA
ATAATTGCAA CAGAAAGGTC TTTACAACCA CATCTGCCCC CATTTGAATA CCTTAAAGAA
AAGTGTATTA AATTAAACGT GGGTGATGAA ATAAATCTAA GTGATTTATC TTTAAAATTG
AGTGAAAGTG GATATATCAA GTCTAATAAT ATAGATCAAG AAGGAACATG GACAAGACGC
GGAGATATTA TTGATATTTA CCCTGTTAGT AGTGAACTTC CAATTAGATT AGAGTTATTT
GGTGATCTAT TAGATAAGAT TAAAGAATTT GATCCAATTT CACAAAGGTC ATTAGATCAA
ATCAACAATG TATGCATAAC ACCCACAGGT TTTGATCCAC TAATCATTAA TAAGCTTATA
TCAACTGACA ACAAGGATAT ATCGAGTTTA TTTACTAATG ATGAGTTCTC TGAGTTAGTA
AATTCAAATA AATTGGATTC AGCAAAGAAA TATTTAGGAG TTGCATTTGA TAAGCCTTCA
TCATTATTAG ATTATTTAGA TGATAAGACA TTTATTGTTG TTGATGAGAG GCTTCAAGGT
ATATCTCATG GAAAAGCTTG GTATAATATC GTTAATGAAA ATTATACAGA TGTAATTACT
ACTATAAAAG GTAGTGAAGG AATAAAGACT ATATTTAAAC CTAATCTTCA TAAAGACATT
AATGATATAT ATGATTCTCT AAATAATTAT AAAGGTATTG ATATAACAGA TTTAGAAGAC
ACTACAAAGA AAACGAATGT TTTTAGTATT TCAAGCAAAG TTCATAATTG GCTACCTAAT
CAATACGGTA AAATAAGTTT ATCTTTAAAA GATTACATTA AGGATAAATA TTCTATTTGG
ATAATTTCAG CACAACCTAG TCGTGCAGTT TCTTTATTAG AAGAACATGA ATGTATCTCA
AAGTTTATAC CTAACAATAC CGATCTTAAT GGTATCAAAA ATATTATCGA TGACAATATT
CCAGTAGCTA TTAAAAATAA AAATGAGGGT GAAATTGAAG GATTTTATCT TCCTGCATGG
AAAATTGCAC TATTAACGGA TAAGGAGTTT TTCGGACAAC AAAATATTTC TACGACTGGT
TATATAAGAA GAAGAAAACA ATCTCAAAGT AAAAAGATAG ATCCTAATAA GATGAAACCA
GGCGATTATG TTGTTCATAG AAATCATGGA ATTGGTTTAT TTCAGAAAAT TGAAAAATTA
AATATTAATG GAGAGTCAAG AGATTATTTG GTAATAAAAT ATATGGATGG AAAGTTAAGT
GTTGCCGCAG ATCAACTTGG AAGTTTAGGT AGGTATAGAA GTTCAAATGC AAAGACTCCT
ACAATTAGTA AATTAGGAGG GGCTAATTGG AACAAAATAA AGGAAAAGGC AAAGAAATCC
GTTAAAAAAG TTGCTATTGA TTTAATTAAG TTATATGCAG AAAGAAGTAA AGAAAAAGGG
TATAAATTTC CATGTGATGG TCCCTGGCAA AGCGAATTAG AAGACTCATT TCCATACGCA
CTTACACCTG ATCAAGCAAC AGCTACATCT CAAGTTAAAT CTGATATGGA AAGTGAAAAG
CCTATGGATA GATTGGTTTG CGGCGATGTT GGATTTGGAA AAACAGAAGT TGCTATACGA
GCAATATTTA AGGCTATTAC CTCAGGAAAA CAAATAGCTT TATTAGCACC AACGACTGTA
TTATCTCAAC AACATTGGAG AACTATTTCT GATCGATTTG CTCCTTATCC TATAAAAGTT
TCATTACTCA ACAGATTTAA AACAAATAGT GAAAAAAAAC ATATAGTTAG TGGCCTGAAA
GCTGGACAAA TTGATGCAGT TGTTGGTACA CATCAGCTCT TGAACAAAAA ATTAGTTTAT
AAGGACTTGG GACTTCTAGT TATAGATGAA GAACAACGTT TTGGAGTTAA TCAAAAAGAG
AAAATAAAGG AGTTAAAAAA AAGTGTAGAT GTATTAACTC TTTCAGCGAC TCCAATTCCA
AGAACACTCT ATATGAGTCT TTCTGGTGTC CGTGAAATGA GTTTAATAAC AACACCGCCT
CCCCTACGAA GGCCGATTAA AACACACTTA GCACCCCTCG ATAATGAAAT AATAAGAAGT
GCAATTTCGC AAGAGATTGA TAGAGGTGGC CAAATATTTT ATATTGTTCC TCGAATAAAA
GGAATAGAAG ATGTAGCAGA GAAATTAAAA ATTATGATCC CAAATGTGAA ATTATTGATT
GCACATGGTC AAATGGAGGA GGGAGCATTA GAGAATGCAA TGCTTGCATT TAATGCAGGA
GAAGCCGATA TTTTGCTTTG TACAACTATT GTAGAAAGTG GATTAGATAT TCCTAGAGTA
AATACTATTT TAATTGAAGA TTCTCACAAG TTTGGTTTAT CTCAACTTTA CCAATTGAGA
GGCAGAGTAG GCCGAAGTGG AGTACAAGCA CATGCTTGGT TATTTTATCC AAGCGATGAG
AAATTAAATG AGACCTCAAG GCAACGTTTA AAGGCTATAA AAGAATTTAG TGATTTGGGC
AGTGGTTATC AGTTAGCCAT GAGGGACATG GAAATTAGAG GCGTTGGAAA TATCTTAGGT
ATTGAACAAA GCGGACAAAT GGAAACAATA GGATTTGATT TGTATATGGA ATTATTGCAG
GAAACTATTG CCGAAATACA GGGGCAAGAC ATTCCTAGTG TTGACGATAC TCAAATAGAT
CTACCTGTTA CAGCTTTTAT ACCGGGAGAT TGGATAACTG ATCCAGATGA AAAAATAAAT
GCATATAGAT TAGCCACACA ATGCGAAAAC AATGATTCAT TAGTTCAATT TGCTAGCAAC
TTGGTTGATA GATATGGAAC ATTACCAAAA GCAGTTGAAT CATTAATAGA AGTAATGAAA
TTAAAAATAA TCGCTAAAAA GTGTGGCTTC TCAAGAATCA AGTTATCCAA ACCAAATGTT
GAGCTTGAGA CCATGATGGA TGAGCCAGCA TTCAAGTTAC TAAGAAAAGG TTTGGCTAAT
CATCTTCATG GAAGATTTAT TTACAAGAAA GGGGATAGGT GTTCAACGGT GACTATTCGA
GGACTCGGAA TCTTGGATAG CGATAAACTT CTAGATCAAT TAACAGAATG GCTAAAACTT
ATGAATTCAG AAATAAACGC TTAA
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| Protein sequence | MSLESIAKYL EKHHLTTELI ERTNREERLT LTGASRTAKA LITTSLAKNE SKRLLVIVPT
LEEATRWYPL VKDCGWTKTC LYPTSEVSPY ETTQVTSEII WGQLQVLSDI LELKDDENIA
IIATERSLQP HLPPFEYLKE KCIKLNVGDE INLSDLSLKL SESGYIKSNN IDQEGTWTRR
GDIIDIYPVS SELPIRLELF GDLLDKIKEF DPISQRSLDQ INNVCITPTG FDPLIINKLI
STDNKDISSL FTNDEFSELV NSNKLDSAKK YLGVAFDKPS SLLDYLDDKT FIVVDERLQG
ISHGKAWYNI VNENYTDVIT TIKGSEGIKT IFKPNLHKDI NDIYDSLNNY KGIDITDLED
TTKKTNVFSI SSKVHNWLPN QYGKISLSLK DYIKDKYSIW IISAQPSRAV SLLEEHECIS
KFIPNNTDLN GIKNIIDDNI PVAIKNKNEG EIEGFYLPAW KIALLTDKEF FGQQNISTTG
YIRRRKQSQS KKIDPNKMKP GDYVVHRNHG IGLFQKIEKL NINGESRDYL VIKYMDGKLS
VAADQLGSLG RYRSSNAKTP TISKLGGANW NKIKEKAKKS VKKVAIDLIK LYAERSKEKG
YKFPCDGPWQ SELEDSFPYA LTPDQATATS QVKSDMESEK PMDRLVCGDV GFGKTEVAIR
AIFKAITSGK QIALLAPTTV LSQQHWRTIS DRFAPYPIKV SLLNRFKTNS EKKHIVSGLK
AGQIDAVVGT HQLLNKKLVY KDLGLLVIDE EQRFGVNQKE KIKELKKSVD VLTLSATPIP
RTLYMSLSGV REMSLITTPP PLRRPIKTHL APLDNEIIRS AISQEIDRGG QIFYIVPRIK
GIEDVAEKLK IMIPNVKLLI AHGQMEEGAL ENAMLAFNAG EADILLCTTI VESGLDIPRV
NTILIEDSHK FGLSQLYQLR GRVGRSGVQA HAWLFYPSDE KLNETSRQRL KAIKEFSDLG
SGYQLAMRDM EIRGVGNILG IEQSGQMETI GFDLYMELLQ ETIAEIQGQD IPSVDDTQID
LPVTAFIPGD WITDPDEKIN AYRLATQCEN NDSLVQFASN LVDRYGTLPK AVESLIEVMK
LKIIAKKCGF SRIKLSKPNV ELETMMDEPA FKLLRKGLAN HLHGRFIYKK GDRCSTVTIR
GLGILDSDKL LDQLTEWLKL MNSEINA
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