| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_09151 |
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| Symbol | mfd |
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| ID | 4719323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9515 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008817 |
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| Strand | - |
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| Start bp | 815315 |
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| End bp | 818842 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 640080593 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_001011229 |
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| Protein GI | 123966148 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAA ACTCCTTAAT TAGTTATATT TCAAATTCAC AAATTATAAC AGAGTTAGTA
AAAAGAATTG AAAAAAATAA AGAACTAAAT ATCATTGGGT CTAGTAGATA TGCAAAATCT
ATTATTATAA ATAGTTTAGC AAAAAAAGAA AATAAAAATA TTATACTTGT GAGCCCTAAT
GAAGAAATTG CTTATAAATG GTATGGATAT TTTAATAGTA TAGGTAACAG AAATATCTTA
TATTATCCAC CTAGTAAAAA TTTACCTTAC GGATCAATTA ATAAATCAAA AGAGACTGAA
TATTCACAGT TATCAGTTAT CTCAAAACTA ATAAATAATG ACAAAGAAGA AAAAAATATA
ATAATAACAA CTGAAAGATC TCTTCAACCA CATTTAATTA AAAAAAATAT ATTTAAGCAA
AAAATAATAA CACTTAATAA GGGTTTAGCT ATAGAAATAA AAGAGTTAAC AAGTCAGTTA
GTTTCATTAG GTTATAACAA GGAAAATCTT ACTTCACAGG AAGGTTCTTG GAGCAGAAGA
GGAGAAATAA TTGATATATA CCCAGTTAAC AATGAACTAC CCATAAGAAT AGAATTCTTC
GATAATATTA TTGATAAAAT TAGAGAATAT GATCCAGTAA CTCAAAGAAC GTTAGATAGT
ATTAATAAAG TTGAGATTGT ACAGGTTGGA TATAATTCAT TAATAAGAGA AAAGTTAGAA
CTACTATCAG ACGAAGGGGT TTTTAATTCA GAAGAAATAA CAACTAAAAA TAATCTAGAT
AGATACTTAG GAATAATTGA AGAATATCCA TCTAATCTTA TAAATTATAT AAATGAAGAT
TCAATTATTG TTATAGATGA AATAGATGAC TGCACTAAAT TTGCAAACAA TTGGTATATT
GAATCAGTTA ATAATTTTGA TCATTTCAAA GATGAAATTA CTCAAAACTT ACGGTCCAAT
AATATAAATA TAAAAGTTAA ACCTAATCTA CATGAAAAAT TCGAGTATAT ATTAAAAACA
TTCAGTGATT TTATTGTAAT AAACTTGTAT GAATTTGAAT CAAAGAGAAA TTTAGATAAC
AGATTTCTTT TATCAGATAA ACGTATAAAT TCATCCTCTA AAAACATAGG TAAACTTTCA
AAAGAAATTA ATAAATTTAT CTTAAATAAA GATAAAGTCT GGATATTATC TGCACAGCCA
TTAAGAACAA GGAGTTTACT CTTTGAACAT GATTGCAATA CTAATTATTT GGAAAAACCT
AATGATCTTG ATAACGCTTA TAAATTAATA GATATTCCTA CACCAGTTAT TATTAAAAAT
AAAAACAACT ATGAAATAGA AGGTTTTTAT CTCCCAATAT GGAAGATAAT TTTAATAACA
GATAAGGAAT TATTTTCACA ACAAGCTTTA TTTAATAATG TCTTTATAAG GAGAAGAAAA
AGGAGCGTAA ATTCAAATAT AAATGTTAAT AAAATTAATC CTGGAGACTA TATAGTTCAT
AAAAATCATG GTATTGGACA ATTCTTAAAA TTAGAAAAAA TAAATATAAC AGGTGAATCA
AGAGACTATC TAGTTATTAA ATATCTTGAT GGAAAAATAA GTGTTGCTGC TGATCAACTA
GGGAGCATAA ACAGATATAG ATCTACTGGT AAAATTATGC CCAAAATAAA TAAATTAGGA
GGAGCAGAAT GGTTAAAAAT TAAAGATAAA AATAGAAAAA TAATAAAAAA AGTTGCTTAT
GATATTCTAA AACTTTACGC AAAAAGAGAG AAACTTAAAG GCCATATATA TCCTGAAGAT
GGACCGTGGC AAAAAGAATT AGAAGAGTCA TTCCCTTACC AACCTACTCC TGATCAACTA
ACAGCCGTGA AGGAAATCAA AATTGATATG GAAAGTGATA AACCTATGGA TAGATTAGTT
TGTGGAGACG TTGGTTTCGG AAAAACAGAA GTAGCAGTAA GAGCAATTTT TAAAGCAATT
ACATCAGGGA AGCAAGTGAT TTTACTTGCT CCAACAACAA TTTTAGCTCA ACAACATTGG
AGAACTTTTA ATAATAGATT TTCACCTTAT CCAATAAAAG TTTCTTTACT TAATAGATTT
AAAACTAGTA GTGAGAAAAA AGATATTTAT GCTGGTTTAA AAAATAATAA GATTGATTTA
GTTGTAGCCA CTCATCAAAT TTTAGGAAAA GAAATCGAAA TAAAAAATTT AGGATTGCTT
GTTATTGATG AAGAACAAAG ATTTGGAGTT AGACAAAAAG AAAAAATTAA AAATATTAAA
ACTAATATTG ACGTGTTAAC TCTATCGGCC ACACCAATAC CACGGACCCT TTACATGAGT
TTGTCTGGCC TTAGACAAAT GAGTTTATTA AATACTCCTC CACCATCCAG AAGATCAATT
AAAACATATT TATCTGAAAT TGATATGGAT GTAATCAGAA CTGCAATAAG TCAAGAACTT
GATAGAGGTG GTCAAATCTT TTACGTTCTT CCAAGAATAT CGGATATTGA TCAAGCCGTT
AATAAATTAA CAAATATGTT TAATGATTTA AAATTTATAG TTGCTCATGG CCAAATGAAT
GAAATAGATC TTGAAAATGC AATGATTGCA TTTAATAATG GCGAGGTAGA CTTGATGATT
TGCACAACAA TTATTGAAAG CGGATTAGAT ATACCCAAAG TAAATACAAT CATAATTGAA
GATTCACATA AATTTGGGCT ATCGCAACTC TATCAATTAC GAGGAAGAGT CGGGAGAAGT
GGGATACAAG CTCATGCATG GTTATTTTAT CCAAATTTAA ACAACATTAA TGAAGCTTCC
AAGCAAAGGC TAAAGGCTAT AAAAGATTTT TCTGAACTAG GAAGCGGATA TCAACTTGCC
ATGAAAGATA TGGAGATAAG AGGAGTTGGA AGTTTATTGG GGGAAGAGCA AAGTGGAAAA
GTTAATGCAA TTGGATATGA TCTATATATT GAAATGTTAC ACGAAGCAAT CTCAGAAATA
AATGGTCAGG AAATACCGGA AGTAAAGGAT ACTCAAGTAG ATTTGCCAAT TAATGCTTTT
ATCCCTGCAA CTTGGATATT AAACCGAGAA GAGAAACTAG ATGCTTATAA AGAAGCTACA
GAATGTAATA CCCACAAGGA GCTTACAGAG CTGGCAACTG ACTGGTCTAA TAGATACGGA
GTTTTACCCA AACCTGTTGA ATCTTTAATA CTTTTAATGA AGTTAAAATT ATTAGCAAAA
AAATGTGGCT TTAATAAAAT TAAACTTAAA AAACCTAACA TAATAATAGA GACTAGATTA
AAAATCTCAA CATTTAAACT TATTAAAAAA GCGTTACCAA CAAATATTCA AAATAAATTT
AGTTTTGAGG AAGATGATCA GTTCTCAAAA ATAACAATTA GAGGGATAGG TATTACTGAT
ATACAAAATC AAATTGATCA GTTAATTTAT TGGTTAGGTT TATTTGTAAA TGAAATAAAT
AACTTCGATA AAAATACAGT TGAATCCAAA AACTTAAATA TTAAATAA
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| Protein sequence | MSLNSLISYI SNSQIITELV KRIEKNKELN IIGSSRYAKS IIINSLAKKE NKNIILVSPN
EEIAYKWYGY FNSIGNRNIL YYPPSKNLPY GSINKSKETE YSQLSVISKL INNDKEEKNI
IITTERSLQP HLIKKNIFKQ KIITLNKGLA IEIKELTSQL VSLGYNKENL TSQEGSWSRR
GEIIDIYPVN NELPIRIEFF DNIIDKIREY DPVTQRTLDS INKVEIVQVG YNSLIREKLE
LLSDEGVFNS EEITTKNNLD RYLGIIEEYP SNLINYINED SIIVIDEIDD CTKFANNWYI
ESVNNFDHFK DEITQNLRSN NINIKVKPNL HEKFEYILKT FSDFIVINLY EFESKRNLDN
RFLLSDKRIN SSSKNIGKLS KEINKFILNK DKVWILSAQP LRTRSLLFEH DCNTNYLEKP
NDLDNAYKLI DIPTPVIIKN KNNYEIEGFY LPIWKIILIT DKELFSQQAL FNNVFIRRRK
RSVNSNINVN KINPGDYIVH KNHGIGQFLK LEKINITGES RDYLVIKYLD GKISVAADQL
GSINRYRSTG KIMPKINKLG GAEWLKIKDK NRKIIKKVAY DILKLYAKRE KLKGHIYPED
GPWQKELEES FPYQPTPDQL TAVKEIKIDM ESDKPMDRLV CGDVGFGKTE VAVRAIFKAI
TSGKQVILLA PTTILAQQHW RTFNNRFSPY PIKVSLLNRF KTSSEKKDIY AGLKNNKIDL
VVATHQILGK EIEIKNLGLL VIDEEQRFGV RQKEKIKNIK TNIDVLTLSA TPIPRTLYMS
LSGLRQMSLL NTPPPSRRSI KTYLSEIDMD VIRTAISQEL DRGGQIFYVL PRISDIDQAV
NKLTNMFNDL KFIVAHGQMN EIDLENAMIA FNNGEVDLMI CTTIIESGLD IPKVNTIIIE
DSHKFGLSQL YQLRGRVGRS GIQAHAWLFY PNLNNINEAS KQRLKAIKDF SELGSGYQLA
MKDMEIRGVG SLLGEEQSGK VNAIGYDLYI EMLHEAISEI NGQEIPEVKD TQVDLPINAF
IPATWILNRE EKLDAYKEAT ECNTHKELTE LATDWSNRYG VLPKPVESLI LLMKLKLLAK
KCGFNKIKLK KPNIIIETRL KISTFKLIKK ALPTNIQNKF SFEEDDQFSK ITIRGIGITD
IQNQIDQLIY WLGLFVNEIN NFDKNTVESK NLNIK
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