| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2376 |
|---|
| Symbol | |
|---|
| ID | 4709223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2609369 |
|---|
| End bp | 2610448 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639856851 |
|---|
| Product | general secretion pathway protein C |
|---|
| Protein accession | YP_001003941 |
|---|
| Protein GI | 121999154 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3031] Type II secretory pathway, component PulC |
|---|
| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.490477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGG AACAGACGCA GATCTGGATT GAGCGCCTCC GGGCGCTTGC CACCCCGGAG
CGGGGCGCCC CCTGGGTGCG CCGGGCGGGG ACGGTGCTGC TCGCCCTGGC CGTGGTGCTG
ATCGCCGCCA CCGCCGCGGA GGTTACCTGG CGGGTCGTCG CCCCACCCCC GGACTCGACG
GAGAGCACCG CCACGGCGCA AGGCCCCGCC CCCCGCCCGG GCGACGAAGA TACCGATGAC
GCACCGGAGG GCTTGCGCAG CGTGGCCGAC CACCACCTCT TCGGCCGCCC GCCGGACGAC
CGCGATGCAA GACCGGAGAT CCCCACGGAC GCCCCCGAGA CGCGCCTCAA CCTGGCCCTC
AAGGGCGTCC TGGCCATCGG CGGCGAGGGC CAGGGGGCCG CCATCATCGA GGAGGAGGGC
GAGCACCGCG TCTACTTCGC CGGGGCCAAA CTCGCCAGCA ACGCCGTGGT CGAGCGAGTG
GAGCGGGACC GGGTCATCCT CTCCCGGGAC GGGGACTTCG AGATGCTCTC CCTGGAGCGG
GAGGTCCTCG AGGTGGAAGA GGCCGCGCTG GAGGTGGACG ACGACGACTT CCCCGGAGTC
GCCGTCCACG GACAACCCGG GGAGGCGGAT ACCGGCCTGG GCGTCGAGGA CACCGATGCG
CTGAGCGAGG CGGAGGGGGT CGATGACGAC GCCGCAGAGT CCGACACCGG GGCCAAAGAC
GACTCGCCCG CCGATCCGGC TGATACCGCC GGGCAGATCG CCCGCGAGGA ACTCGAGTCC
CTGGAACAGC AGTTTCGCGA AGATCCCGGC CAGATCACCC GCATGGTGCA GGTACGGCCG
GTGATGGGCG ACGGCGCCAT CCGGGGTTTC CGGCTCAGCG CCATGGATGA CCGGGGGGCG
GAACTGATGG ATCAGCTCGG GCTGCGCAAC GAGGACGTGA TCACCGAGGT GGAGGGCGTC
TCGGTAGCTG ATCAGCAGGG GCTGCAGTCC CTGGTCGAGG AGATGCGCGA GGCCTCGCGG
GTACGGGTGC GCCTGGAGCG CAACGGCAGC GAGCAAGAGA TGACCCTGAG GATCGAGTAA
|
|---|
| Protein sequence | MATEQTQIWI ERLRALATPE RGAPWVRRAG TVLLALAVVL IAATAAEVTW RVVAPPPDST
ESTATAQGPA PRPGDEDTDD APEGLRSVAD HHLFGRPPDD RDARPEIPTD APETRLNLAL
KGVLAIGGEG QGAAIIEEEG EHRVYFAGAK LASNAVVERV ERDRVILSRD GDFEMLSLER
EVLEVEEAAL EVDDDDFPGV AVHGQPGEAD TGLGVEDTDA LSEAEGVDDD AAESDTGAKD
DSPADPADTA GQIAREELES LEQQFREDPG QITRMVQVRP VMGDGAIRGF RLSAMDDRGA
ELMDQLGLRN EDVITEVEGV SVADQQGLQS LVEEMREASR VRVRLERNGS EQEMTLRIE
|
|---|
| |