Gene Hhal_2338 details

Gene Information

• Locus tag: Hhal_2338
• ID: 4709261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 2563347
• End bp: 2565176
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639856813
• Product: cytochrome c biogenesis protein, transmembrane region
• Protein accession: YP_001003903
• Protein GI: 121999116
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4232] Thiol:disulfide interchange protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.369158
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGGCA GGATGCGATT CGACCGAGGT GGCCTGGTCG CCGCGCTGTG GCTGGCGTTG 
GGTCTGCTGG TGGCGGCCAC CCCGGCACAG GGAATGGTGG ATCAACAGGA GATCTTCCCG 
TTCACCGTCG AGCAGGTGGG CGAGGATCGC CTGGTCGCTC GCTGGGATGT GGCCGAGGAC 
CACTACCTCT ATCGCCACGC CTTCGACTTC GAGCTGCGCG ACGGCGACAA CGAGATCATC 
GAGGTCTCCT ACCCCAGTGG CGAGGCCTTC TCCGATGAGT TCTTCGGGGA TGTGGTCATC 
TACCGGGGTA CGCTGCAGGT GCACCTGCAG ACCGCCGAAC CGGTCGGCGA GGGGGCGCAG 
CTCTACGCCG AGTTCCAGGG CTGCAACGAG CCCGAATCCC TCTGCTATCC GCCGAGCAGT 
CTGGAAGCCG AGATCGCCTC CGGCGCGGTA CAGTACAGCG ATGGCTCCGG CGGTGCCGGT 
GCCGCCGGGG GCGGCGGCCA GGGCCCCATG GGCGAGCTGG AGGCGCTGCT CGGTGGGGGG 
AATCTGTGGG CCATCCTCGG CGGTTTCTTT GCCGCCGGGC TGTTGCTGGC CTTCACCGCC 
TGCATCTACC CGATGATCCC CATCCTCTCG GGGCTGATCG TCGGTAGCCA GCCGGGCGGC 
GGGCGGCCGG GTACCGGTCG AGCGCTCTGG CTGTCCTTCG TCTATGTCCA GGGCATGGCG 
ATCACCTACG CCCTGGCCGG TGCATTGGCC GGACTCTCCG GGCGGGCCAT CCAGGCCGAT 
CTGCAGGGGC CGGTGGTTAC CGTGGCCTTC AGTGCCCTGT TCGTCGCCCT GGCGCTGGCG 
ATGTTCGGCC TCTACAACCT GCAGATGCCG GCGTCGGTCC AGGGGCGGCT GCAGGCCGCC 
TCCAGCCGTC TGCCCGGCGG GCAGGTGGCG GGCGTGGCAG CCATGGGTGT GCTCTCCACG 
CTGATCGTCG GTGCCTGCTC GGGGCCGGCG CTGGTGGCCG CCCTGGCATT CATCGGCAAC 
ACCGGTGAGG TGGTGCTGGG CGCCGGCGCG CTCTACATCA TGGCCCTGGG TATGGGGGCG 
CCGTTGCTGG CGGTCGGCAC GGCCGCCGGG CGCTGGATGC CGCGCTCGGG TCCGTGGATG 
GAGTCGGTCA AGCAGGTCTT CGGCTTCATC TTCCTCGGCG TGGCGTGGTG GATGTCGTCC 
CGGCTGATGC CGGATGGGCT GGTGCTCGCT GGTTGGGCGG TGTTGCTGCT GGCGGCTGCG 
GTGTGGCTGG CCTGGCGGCT GCTGCGCAGT CGCGGCACCG GTGGTTCGGT GCCGGCCCGG 
GGCGCCGGGG CCACGCTGGC GGCCGTGCTG GCGGTAGCCG GTGCTGCCCA GGTCCTCGGG 
GCGGTCACCG GTGCCGGTGA CCCGCTGCGC CCCTGGGTGG GGATCACCGG CGACCCATAC 
GCCCAGGCCC GCGCCCAGGT GCTCGAGGAG TGGCGGCACG TCGAGACCCT CGATGAGCTT 
GAGGAGCTGC TTGACGAGGC CCGCGAGGCG GGGCGCCCGG TGGTGATCGA CTTCTCGGCC 
GAGTGGTGCG TCTACTGTGT CCAGCTTGAG GAGCGTACGC TTCCGGATGA CCGGGTCCAG 
GCGGCCCTTG AAGGCGCCGA GAAGGTACGC ATCGACGTCA CCGACATGAC CGATGCTGAT 
CGGGAACTGA TGGAGGCCTA CGGCGTCTAT CTGCCTCCCG CGATCCTGTT CTACAACGGC 
GAGGGCGAGG AGCAATCGGA GTACCGGGTG GCCGGCTTCA AGGACGCCGA GGCGTTTGCC 
GAGCGCACGC GCGAGGCCTT CGGTGGGTGA 

 

Protein sequence

MTGRMRFDRG GLVAALWLAL GLLVAATPAQ GMVDQQEIFP FTVEQVGEDR LVARWDVAED 
HYLYRHAFDF ELRDGDNEII EVSYPSGEAF SDEFFGDVVI YRGTLQVHLQ TAEPVGEGAQ 
LYAEFQGCNE PESLCYPPSS LEAEIASGAV QYSDGSGGAG AAGGGGQGPM GELEALLGGG 
NLWAILGGFF AAGLLLAFTA CIYPMIPILS GLIVGSQPGG GRPGTGRALW LSFVYVQGMA 
ITYALAGALA GLSGRAIQAD LQGPVVTVAF SALFVALALA MFGLYNLQMP ASVQGRLQAA 
SSRLPGGQVA GVAAMGVLST LIVGACSGPA LVAALAFIGN TGEVVLGAGA LYIMALGMGA 
PLLAVGTAAG RWMPRSGPWM ESVKQVFGFI FLGVAWWMSS RLMPDGLVLA GWAVLLLAAA 
VWLAWRLLRS RGTGGSVPAR GAGATLAAVL AVAGAAQVLG AVTGAGDPLR PWVGITGDPY 
AQARAQVLEE WRHVETLDEL EELLDEAREA GRPVVIDFSA EWCVYCVQLE ERTLPDDRVQ 
AALEGAEKVR IDVTDMTDAD RELMEAYGVY LPPAILFYNG EGEEQSEYRV AGFKDAEAFA 
ERTREAFGG