Gene Hhal_1959 details

Gene Information

• Locus tag: Hhal_1959
• ID: 4710723
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 2154723
• End bp: 2156666
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 639856432
• Product: putative glutamate synthase (NADPH) small subunit
• Protein accession: YP_001003525
• Protein GI: 121998738
• COG category: [E] Amino acid transport and metabolism; [R] General function prediction only
• COG ID: [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGACCC ACGCGGAAGA GATCCCCTTC ACGTTCCGTC GTTACCGCGA CGGCGACGAC 
CGGCAGCGCG CCTGGCGCGA GCAGATCTTC AAGGCGGACA CCTCCCACAA GTGTCCGACC 
TACGTCCACC GCACCCCCCC GTGCCAGGCC AACTGCCCGG CCGGCGAGGA GATCCGCGGC 
TGGCTCCACG CCGCCCGCGG CCTGGAGCAG CCCGCCGAGG GTGAAGAGTG GCAGGCGCTC 
GCCTTCCGGC GCCTGGCCGC CGCCAACCCC TTCCCGGCGG TGATGGGGCG CGTCTGCCCG 
GCCCCCTGTC AGCAGGGCTG CAACCGGCGG GTCGTCGACG ACCACATCGC CATCAACGCC 
ATCGAGCACA CCATCGGCGA CTACGCCCGC GCGCACGCCC TCGACCTCGG CGAACCGGGG 
AGCGACACCG GGCACCACGT CGCCGTCATC GGCGGCGGCC CGGCCGGGCT GTCCGCCGCC 
TACCAGCTGC GCAAGCGCGG CCACCGCTGC ACCCTGTTCG AGGCGCAGCC GGAGCTCGGC 
GGCATGATGC GCTACGGCAT CCCCGGCTAC CGCGTCCCCC GCGAGGTGGT CGACACCGAG 
ATCCAGCGCA TCCTCGACCT CGACGTCGAG GTCCGGACCG GGTGCCGAGT CGGCGAGCAG 
ATCACCCTCG AGCAGCTCGA CGCGGATTAC GACGCCGTCC TGTGGGCCGT GGGCACCCAT 
GAGGGACGCC CGCTACCGGT GGAGGGCTGG GACGAAGCGC CCAACTGCCT CACCGGCGTC 
GAGTTCCTGC GCGCCTTCAA CGAGGGCCGC CTGGGTGCAG TGAGCGATCG CATCCTGGTC 
ATCGGCGGTG GTGACACCTC CATCGACGTG GCCTCGGTGG CCCGGCGCCT GGGCTACAGC 
ACCGAGTTGC CCGACGAGGA GCGGCCGGAG CACGCCGTGC TCGGCTACAC CGCCCATGAC 
GCCGCCAACC TGGCCATCCG CGAAGGGGCC GATGTGGTTC TCACCTCCCT CTTCCCCCGC 
GAGGAGATGG CCGCCTCTGA GCAGGAGATC GAGGACGCCC TGCGCGAGGG GGTGACCATC 
CGCGACGGGG TGATGCCCCT GACCGTCGAG CGCGACGAGA ACGGCCGCGC CTGCGCGGTG 
CGCTTCGCCG AGTGCCGCAT GGAGGGCAAC ACCCCGCACC CGGTGGAGGG GACCGAGTTC 
CGGGTCGAGA CCGACCTGGT CATCGCCGCC ATCGGCCAGC GGGGCAACCT GGAGGGGCTC 
GAAGAGCTCG ACAACGGCCA CGGCTTCATG GACGCCGACA AGTCGTTCCA GCTCAGCGGC 
CGGCCCGGCC ACTTCGTCGC CGGGGACATC ATCCAGCCCC ACCTGCTGAC GACCGCCGTC 
GGGCAGGCAG CCACGGCGGT ACGCGGGATC GACGCCTACC TCGCGGGCCA GGAACCGGCC 
CGCCCGCCCA AGGTCAATGG CCACCACTTC CGGCTGCTCG ACGCCCTGCG TCGTGCCGGC 
CGCGAACCGG AGCCCTACGA GCCGCAGGCG GTGCGCGGCA CCGACGCCAG CGGCTTCGCC 
ATCCACAACT TCGAAGACCG CGCCACCCAC GAGGTGATCC GCCACGACCG GCTTTACCTG 
GGCCACTTCA CCCCGGCCGA GCGCCCGGAG CGTGAGCGCC GGGCCATCGA CCCGGACGGC 
GTGATCGGCG ACTTCAACGA GCGCATCCAG CCGCTGCCCG CCGAAACGGC GCGGACCGAG 
GCCCGGCGCT GCATGAGCTG TGGCCTGTGC TTCGAGTGCG ATAACTGCCT GGTCTACTGC 
CCGCAGAGCG CCGTGCAGCG GGTACCCAAG GCCGAGCGAG CCACCGGCCG CTACGTGCGT 
ACCGATTACA GCCGCTGCGT GGGCTGCCAC ATCTGCCGGG ACGTCTGTCC GACCGGCTAC 
ATCGAGATGG GGCTCGGCGA GTAG 

 

Protein sequence

MATHAEEIPF TFRRYRDGDD RQRAWREQIF KADTSHKCPT YVHRTPPCQA NCPAGEEIRG 
WLHAARGLEQ PAEGEEWQAL AFRRLAAANP FPAVMGRVCP APCQQGCNRR VVDDHIAINA 
IEHTIGDYAR AHALDLGEPG SDTGHHVAVI GGGPAGLSAA YQLRKRGHRC TLFEAQPELG 
GMMRYGIPGY RVPREVVDTE IQRILDLDVE VRTGCRVGEQ ITLEQLDADY DAVLWAVGTH 
EGRPLPVEGW DEAPNCLTGV EFLRAFNEGR LGAVSDRILV IGGGDTSIDV ASVARRLGYS 
TELPDEERPE HAVLGYTAHD AANLAIREGA DVVLTSLFPR EEMAASEQEI EDALREGVTI 
RDGVMPLTVE RDENGRACAV RFAECRMEGN TPHPVEGTEF RVETDLVIAA IGQRGNLEGL 
EELDNGHGFM DADKSFQLSG RPGHFVAGDI IQPHLLTTAV GQAATAVRGI DAYLAGQEPA 
RPPKVNGHHF RLLDALRRAG REPEPYEPQA VRGTDASGFA IHNFEDRATH EVIRHDRLYL 
GHFTPAERPE RERRAIDPDG VIGDFNERIQ PLPAETARTE ARRCMSCGLC FECDNCLVYC 
PQSAVQRVPK AERATGRYVR TDYSRCVGCH ICRDVCPTGY IEMGLGE