Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1926 |
Symbol | |
ID | 4710785 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 2120645 |
End bp | 2122528 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639856399 |
Product | TonB-dependent receptor |
Protein accession | YP_001003492 |
Protein GI | 121998705 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.201933 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCAGCA ACACCACCAG CCGGGTCGCC GCGGGTGTGG CGGCCGGTCT TGCCGTAAGT GCCGGCCCGG CGATCGCCGA TACCGACGGG GAGTCCGCAC AACTCGCGCC CCTCGTGGTC ACGCCAACTC GAATGGCCCA GACCGTCGAT GAGTCCCTGT CCTCCGTCTC CGTCATCGAC CGCGAGCAGA TCGACCGCCA GCAGCCTCGG CAGGTCTCGG ATCTGCTGCA GGGTCAGGCG GGGTCGAGCC TGACGACGTC GGGTCCGTTC GGCAAGAGCA CCAGTCTGTT CATGCGCGGT ACCAACTCTG ACCATACCCT GTTGCTGGTC GATGGGGTGC CGATGAATTC GGCGACGCAA GGAGGGGCCG CCTGGCAATA TCTGCCTCCT GCCGAGATTG ACCGCATCGA GGTGGTGCGC GGGCCGCGCA CCAGCGTCTA CGGCGCCGAC GCCGTCGGCG GTGTGGTCCA GGTCTTCACC CGCCAGGGGG AGGAGGGCCC TCCGCGCTTC CGTGCCTTCG GCGGCGCCGG GTCGTTCAAC ACCCACGAAT TCGGTTTGGG TGTCTCTGGC GGGACTGCGG CTAGCCGCTA CGCCCTCTCG GCCAGCCACT ACGAGACGGA CGGGATCAAC GTCCAGGACG GTGAGGGAGA TGAGGACCCC GACGGCTTTG AGAACACCAG CTTCAGCGGC CGTTTCAGCC ATCGGCTACC CGGCGGTGCC GAACTCTTCG CGACGGGGTT CCGCTCAGAG GGTACAAACG AGTTCGACGG GACAAGACTT GGCGAAGAGG ACTGGACGGA TCACTACTTC CAGGCCCTCC GTGGCGGCGT CCGCGGGGAC CTCACCGAGC GCTGGTTCAG CGAGCTGGCG GTCTCCCAGG CGAAGGATGA GCAGGATAAC GTCGATAGCC GGGGAGAGAC ATGGCAGTAC ACTGAACGCC ACGAGGTAAG TTGGCGGAAT GAGCTGTATT GGGGCGCCGG GCATGTCTGG GCCTTTGGCG GTGACTGGCG AGATGAGAAA GTCGACACCG CCGACGATTA TGACGAAACC AGCCGGTACA ACGCCGGTGC GTATTCGCAG CTCGAGTTGG ATTTAGGCCG ACATGACCTC GGTGCCAGCC TGCGTTACGA CGACAACGAG GCTTACGGTG ACAACGTGAC CGGTCAGGTC GCCTGGGGCT TTGACGCAAC GGATCGACTT CGGCTGCGTT CGAGCTACGG CACGGCTTTC AAGGCGCCGA CATTCAACGA CCTGTATGCA CCTGAAAACC CGAATTGGTT GCTTGCCGGA GGAAATACGG ACCTTGAGGC CGAGACGTCC GCTTCTGCGG AGGTGGGTGC ACGCTGGCAG GTCAGAAGGG GCTATGTGGA TGCAGCGCTG TTCCGGACGG ACATCGACAA TTTGATCGCT GATAAGCCAG TGGATGGTCA GCAGGATTGG ACGCAGCCTG GCAATGTCGA AGAGGCCCGC ATCCGCGGTG CCGAGCTGGA GGCGGGGGCG CACTGGCAGG AATGGCAGTT TTCTGGCGCG TTCACCTACC TCGATCACGA GGACCGGGAG ACGGGTGAGG AGTTGCTTCG GCGCCCGAGT GAGTCGTTCC GATTGGAAAT CGATCGCGAG CTGGGGGATT TTTCCTTGGG GGCCACTGGC CTGCTGCGGG GGCGAAGCTA TGACACCGAT TTTGATATGG CTACCAGTCA GTCGGAACGC GTGCGCCTCT CCGGCTACGG CCTCCTCAAT CTCCGCACCA GCTACGCCAT CACCCCGGAG TGGACCCTGC GCGGGACGCT GGAGAACGCC CTGGACAAGG AGTACGAGAC GGTGGGCGGC TACAACCAGC CGGGGCGGGC GGTGTACGTC TCGCTGCACT TCAATCAGCA GTAG
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Protein sequence | MPSNTTSRVA AGVAAGLAVS AGPAIADTDG ESAQLAPLVV TPTRMAQTVD ESLSSVSVID REQIDRQQPR QVSDLLQGQA GSSLTTSGPF GKSTSLFMRG TNSDHTLLLV DGVPMNSATQ GGAAWQYLPP AEIDRIEVVR GPRTSVYGAD AVGGVVQVFT RQGEEGPPRF RAFGGAGSFN THEFGLGVSG GTAASRYALS ASHYETDGIN VQDGEGDEDP DGFENTSFSG RFSHRLPGGA ELFATGFRSE GTNEFDGTRL GEEDWTDHYF QALRGGVRGD LTERWFSELA VSQAKDEQDN VDSRGETWQY TERHEVSWRN ELYWGAGHVW AFGGDWRDEK VDTADDYDET SRYNAGAYSQ LELDLGRHDL GASLRYDDNE AYGDNVTGQV AWGFDATDRL RLRSSYGTAF KAPTFNDLYA PENPNWLLAG GNTDLEAETS ASAEVGARWQ VRRGYVDAAL FRTDIDNLIA DKPVDGQQDW TQPGNVEEAR IRGAELEAGA HWQEWQFSGA FTYLDHEDRE TGEELLRRPS ESFRLEIDRE LGDFSLGATG LLRGRSYDTD FDMATSQSER VRLSGYGLLN LRTSYAITPE WTLRGTLENA LDKEYETVGG YNQPGRAVYV SLHFNQQ
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