Gene Hhal_1711 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1711 
Symbol 
ID4710256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1870003 
End bp1873545 
Gene Length3543 bp 
Protein Length1180 aa 
Translation table11 
GC content72% 
IMG OID639856178 
Producthypothetical protein 
Protein accessionYP_001003277 
Protein GI121998490 
COG category[S] Function unknown 
COG ID[COG4717] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGACTGC GCCGGATCCA GATCCTGCGT CTGCCCGGGA TCGACCCGGG CTTCACCGTA 
GAGGGCATGG GCGACGGGCT GCAGTTGATT GTCGGCCCCA ACGCCTCGGG CAAGAGCAGT
CTGATCCGCG CCCTGCACGC CCTGCTCGAA CCGGGCCGAC GCATGACCGG CACGGTGCAC
CTGGAAGCGG ACATCGACAC GGCTACCGGC CCGATGCAGG TGGTCAGGAT CGGCGACCGA
GTCACCTGGT ATCGGGATGG CGCCCCGGCC GATCCGCCTG CACTGCCGCC CCCACACCTG
CTCGACTGCT ACGCCCTGCA GGTGGAAGGG CTCACCGATC CGGGTGCCAC CGACGCCGAG
ATCGGTCGGG CGCTCGTCCG CGAGCTTGCC GGCGGCTACG ATCTGGCCGC GCTGACCGCC
CAGCGCGGCC CGTTCCATAT CAAGCGCAAT CACGGCGAAA CCGAGGCACG TACCCTGGAA
CAGGCACGCA GCCAGTGGCG GGAGCGGCGG CAGGAACATG AAGCCCTGAT CGCCGACGAG
CAGCGCCTGG CCGACCTGGA AACGGCTTAC CGGGCTGCCG AGCAGGCCCG GCACGAGGCC
GAGCAACTGC GTCAGGCCGC CGAGCTGGCG GCGGCCCGGG CCGAACTGGA ACAGATCGAT
GACCGGCTGG CCCATTTCCC GGCCGAGATG AACCGGCTCC ATGGCGACGA ACTCCAGCGC
CTGGAACAGG AAGAGGCAGC CCTTGCCCGA CTCCGCACCG AGCAAGAGAA ACTCGCCGAG
GCGGAACGGG CCGCCACCCG ACAACTGACC GAGACCCGAC TGCCCGAAGC CGCCCCCGAT
GCCGAGACCC TGCAGCGCCA CCGCCAGCTG CTGCGCGAAC TCAGCGAGCG CGAGCGGGAG
TGCCGCCAGG CCGAGGAGGA TATCGCGGCC GCCCGGCAGC GGCAGCAGGA ACTCGCCGAG
GCCCTGGGCG TACCAGAACC CGCCGCCGTG CGCATCGACC CGACGGCGCT GCGCACCCTG
GAGGAGCAGC TCGAACCATA CCAGCGCGCC GAGGCGGAAC TGACGGCCCT GGATCGGGAG
CTGGCCCGCC TCTCCGACCC GGACCACCCC CGCCTGCCCC GGGCAGAGAC CGTGCGGACC
GGCCGCCGCG AACTCATCCA CTGGCTCAGC GCCCGCAAAC CGCCCCGCCC GGGGATCCTG
GGCGGTACCG CCGGGGTACT GGGCATGGCC GCACCGCCGA CGCTGGTCGG CACCCTACTG
TGGCTGGAGC CACAGTGGCA GTGGCATCCC GGCTGGGTGG CAGCGGGCCT GGGTGCCACC
GCTGCCCTGA GCTACGCGGC CAGCACCGTA CTCCGCGCCC CGCAGGCCGA CGCCCTGCGC
GACGCAGCCC GCCGGCGCTA CCCCACCGAG CTGCCCCAGC CCAGCGCCTG GGAGCACGAC
CCCGTGGGCA CCTGCCTGGA GCAGCTCGAT ACCCTGCTCC ACGCTGCCGA GCGGCGCGAG
CAGCACAGCC AGCGCGCCGC CGAACAGCAA CGGTGCAAGC GGGAGTTGCA GCGGCTGCGC
GAGGATCTCT CGCGCCGCGC CCGCCAGCTC GGCGGCGACG GCAACCGGTT GGCAGCGAGC
ACCCTGCATT ACCTGCAGAG CCTGCGCGAC TGGAACCAGG CCGCCGCCGA GCGGGCCGAG
GCTGAGGCCC GGCGCGAGGC GCGCCAAGGC GAAGCCGAGC GCCTGCGCAC CGAGGTCAGC
GGCTTTCTCA CCTCCTGGCA CTCCTTACCC CCGGACGGCA GCGACGACGT TGAGGCCCTG
ATCGCCGCCG TCGACGGATT GGCCAACCGA GCCCAACAGC GCACCGAGGC GCTTCGCCAG
CACCAGGACG TGGAGCGATG GCGAGCCGAC CTCCTGCGGC AAGTCGACGA GCGGCGCGCG
GCCATCGAGC AGCTGTTCGC CCGGGCCGGC CTGCCCGACG GGGATCGGGA CACCCTCCGC
CAGCGCCTGG AGCAGCGCCC CGACTGGCAA CAGCTCCAGG AACATCGCCA CCAGTGGCAG
GCCGAGGCAC AAGCGGCCCG CCGCGCCCTG GCCGATGCCA ACGAGCTGCT GCAGCGCGCC
GAGCAGACCT CCGCCGAGAC CCTGCACGCC GAGGCCAGCG ATCGCCTGGC ACGGGCCGGC
GACGCACAGC AGATCAGCGA GACCATCGGT TCAATCCGCC AGCGGATTCA CTACGTCCAG
CAGACACGCC CGCTGGAGCA CACCCGCGCC GAGATCCAGC AGGCCGGCGA TGCACTGGCC
GAACGGCTCG ACGAGGCACT GATCGCCTGC GCGGGCCGCT GGCTGGTGGA CGACGTCCGC
CAGGAACACA CCAGCGAGCG CCGGCCCGAC GCACTGCGCC GCGCCGAGGG GTGGCTGCAC
CGGTTCACCG ACTACCGGTA CACCCTGCGC TTCCTTCCCG ACGCCGAGGG CAACGGCCGG
TTCCTGGCCC ACGACCAGCA TGCCGGCGCC GACCGCAGCC TCGCCGAACT GTCCACGGGC
ACGCGCATGC AGCTGCTGCT CGCCGTCCGG GTCGCCTTTG CGCTGGAAGC GGAACGCGGC
CGAGAACCCC TGCCCCTGTT CCTCGACGAG GCCCTCACCA CCACCGACCG CGAGCGCTTC
AGCGCCGTGG CCGAGGCGCT GGCCACCCTG GCCGAGGAGG ATCGGCGACA GGTCTTTTAC
CTAAGCGCGC AGGCCGCCGA GCCACAGCTC TGGCATCAAG TCGGCATCGA CCCACCGGTG
ATCGACCTAG CGGAAGTCCG CCGCCTGGCC CGGGGCAGCG CCTCCGCCGA AGGCCTCGCG
CTGCCGCCCC GTCCGACGCC CGCGGAGCCC CAGGACCACA CCGCTGCAAG CTACGGAGCC
GCCATCGGTG CCCCCTGGAT CGACCCCTGG CAGGACATCG GTCAGGTCCA CCTGTTCCAT
CTGCTGCGTG ACGACCTCGA GCGATTGCAC CGGATTCTCA ACGCCGGTTT CGAGTATCTG
GGCCCGCTGC GCGGCCTGCT GAGCAGCGAC GCTGCCCGGA CCCTCTTCAC CGAGGAAGAG
GCCAACGATC TGCGGGTCCG GCTTGTCGTC GCCGAGGCGT GGCAGGAGGC CTACACCATC
GGTCGCGGCT TCCCCATCGA CCGCGCCACC CTGGCCGCGG CAACACCGAT CGCCGGCAGC
ACCCTGCGTG ATGACGTGGC CCAACTGGCC GAGACCCACG GCGGCGACGC CGCCGCCATC
CTCGAGGCAT TGCAGAACAA GGCAGTCTCC GGGTTCCGGA CGCGCAAGAT CGGCGAACTC
CGCGACTGGC TGGAACAGCA CGGCTATCTC GACCCGCGCC CACCCAGCCG CCGCGAGGAC
CGGCTGCAGC GCGCCTTGGT CGCCGCCGGC GGGGCGATCC ACGAGGGGAC CGTCACGACC
AGCCAGGTTC GGGGCTGGGT CGATCAACTG GAGGCTGGGC TGGCGCCGGA GGGCGACGGG
GCAGCGGCGA CCCGGGCACT GGCCACCTCC ACGCAACGGG GAACGGCGGA GGCCCCCTCG
TGA
 
Protein sequence
MRLRRIQILR LPGIDPGFTV EGMGDGLQLI VGPNASGKSS LIRALHALLE PGRRMTGTVH 
LEADIDTATG PMQVVRIGDR VTWYRDGAPA DPPALPPPHL LDCYALQVEG LTDPGATDAE
IGRALVRELA GGYDLAALTA QRGPFHIKRN HGETEARTLE QARSQWRERR QEHEALIADE
QRLADLETAY RAAEQARHEA EQLRQAAELA AARAELEQID DRLAHFPAEM NRLHGDELQR
LEQEEAALAR LRTEQEKLAE AERAATRQLT ETRLPEAAPD AETLQRHRQL LRELSERERE
CRQAEEDIAA ARQRQQELAE ALGVPEPAAV RIDPTALRTL EEQLEPYQRA EAELTALDRE
LARLSDPDHP RLPRAETVRT GRRELIHWLS ARKPPRPGIL GGTAGVLGMA APPTLVGTLL
WLEPQWQWHP GWVAAGLGAT AALSYAASTV LRAPQADALR DAARRRYPTE LPQPSAWEHD
PVGTCLEQLD TLLHAAERRE QHSQRAAEQQ RCKRELQRLR EDLSRRARQL GGDGNRLAAS
TLHYLQSLRD WNQAAAERAE AEARREARQG EAERLRTEVS GFLTSWHSLP PDGSDDVEAL
IAAVDGLANR AQQRTEALRQ HQDVERWRAD LLRQVDERRA AIEQLFARAG LPDGDRDTLR
QRLEQRPDWQ QLQEHRHQWQ AEAQAARRAL ADANELLQRA EQTSAETLHA EASDRLARAG
DAQQISETIG SIRQRIHYVQ QTRPLEHTRA EIQQAGDALA ERLDEALIAC AGRWLVDDVR
QEHTSERRPD ALRRAEGWLH RFTDYRYTLR FLPDAEGNGR FLAHDQHAGA DRSLAELSTG
TRMQLLLAVR VAFALEAERG REPLPLFLDE ALTTTDRERF SAVAEALATL AEEDRRQVFY
LSAQAAEPQL WHQVGIDPPV IDLAEVRRLA RGSASAEGLA LPPRPTPAEP QDHTAASYGA
AIGAPWIDPW QDIGQVHLFH LLRDDLERLH RILNAGFEYL GPLRGLLSSD AARTLFTEEE
ANDLRVRLVV AEAWQEAYTI GRGFPIDRAT LAAATPIAGS TLRDDVAQLA ETHGGDAAAI
LEALQNKAVS GFRTRKIGEL RDWLEQHGYL DPRPPSRRED RLQRALVAAG GAIHEGTVTT
SQVRGWVDQL EAGLAPEGDG AAATRALATS TQRGTAEAPS