| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1530 |
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| Symbol | |
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| ID | 4710430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1659845 |
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| End bp | 1662466 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639855997 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001003099 |
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| Protein GI | 121998312 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein
[TIGR03504] FimV C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0304158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGGTT GTGAAGCGTG GCAAGGGTTG TCCGAAGAGG AGTATCTGGA GCGCGCGGCG
GAGCAACTAG AGGCTGGGGA GTACCGTGCG GCGGTTCTTG ACTATAGGAA TGCCCTTCAA
AAAGTAGAGA CGCCCGAGAC CCGCGGTCAG CTCGGGTTGG CGTACGCCGG CGATGGCGAT
ACCGACGCAG CGATTAATCA CCTCACCCGC GCGCTGGAGC AGGGGGCGGA GCCCAAGCGC
TACGCCCCGA CCCTCGCCCG CCTTTATCAC GAGACAAGGC AACACGGCGA GCTGGTCGAC
TTCGAATACG AAGCGCTTGA GGGGGAGGCC AAGGCCCGGG TATTTGCCTA CCGCGCAGTG
GCGGCCTACC ACCGGGGGGA TGACGAAGCG GGTAGCGAGT TGTTGACGGC CGCGGTGAGC
GAAGCAGCGG ACCTTCCGGA GCTGGAGTTG GCAAAGGCCT TTGGTGCCCT CGTTGCCGGT
GATCGGGCGC AAGCTGCGAG CCACCTGGAG GCCGCTGTGG CGCTCGATGA AGACTACTAT
CCGGCATGGA CGCTTCGCGG CAGCCTGGCT GAGGTCGTTG GTGAAAGGCA GAGCGCACGG
GAGGCCTTCG ATCGAGCCGT CGATCTACGA CCCGACTATG TGAGCGATCG TTTCTCGCGA
GCGATGGTTC GGCTTCGCGA AGAAGACTTT GAAGGGGCCC GAGCTGACGC CGAGCAACTG
GTCGAAGGGG CGCCGGGTTT TGCCGGCGGC TACTTCTTGA TGGGGCTCGT AGAACTCGAG
GGTGATTCCC CCGATGAAGC CCGAACGCAG TTCGAGGAAG CGCTGGCACG CCAACGGGAA
TATCGCCCGG CGCGCCCCTA TCTCGCAGGG CTGGAGCTTG AGCGTGGGAA CCTTGCCCAG
GCCGAGCACC ACCTGAATCG ATACCACGCG AGTGGTCCGG GGTCTGTGAC CAGCTACACC
TTGCGGGCAA GGTTGTACAT GGCGCAAGAT CAGCCCGAGG AGGCGCGGGA GGTCCTCAGT
GAGGCGCTCG CGGAACGGCC GGAATGGGTT TCTGAGCTGG GCGATCGGCT AGGTGCGCTC
TATCTGGATA CCGGCGATGT GGAGTCCGGT ATCCAGACCC TGAGGCGTGT TTTGGACGCG
CAACCCGATG CCCTGGAGAC GCGCGAGGTG CTCGGAACGG CGCTGCTGCT GGCCGGAGAC
GAAGAGAAGG GCCTTGAGGA GTTAGAAGCC GTGGCGTCCG CTGATGGGGC CCTGCGTGCA
GCGGATTTGA CATTGGTGCA GGCTTATATC GAGGCTGGGC GTTTCGAGGC GGCGGCGGTC
GCTGCTGAGC GGACCCAGGA TAAGGCCCCG GAGGATCCCG TAGGATATAA CCTCCGTGCC
GCGGTCCTCC TGGGTCAAGG GGATCGCCCG GGGGCGCGGC GTGTGTTGCG AGAAGGGCTG
GAGGCGGTTC CGGACAGTGC CGATCTGGCG ATGAATCTTA GCAGCCTCGA GCGCGCCCGC
GGTGAGGCCG AGGCGGGGAT CGAAGTGCTT CGTGGGGTGC ATCAAGCAGT ACCCGATGAG
CCGCGGGTGG CGATGCGGCT GGCTGAGTGG CTGATCCAGA TGGATTCCGC AGCCGAGGGG
CTGTCCGTGC TTGAGCAAAC CCTGGAAGAA CGTCCGGAGG ATGCACAGTT TCTAGGCGAG
GCCGCACGGA TCTACGGCAT GGCCGGTGAG GACCGAGAGG CGCGGAGGCT GCTCGAGCGC
GCCACGGAGT TGGACCCGGA TGCCGCCGAC CTGCATTACC TGCTCGCGCT GGCGCGTGCG
GCCGCGGGGG ATGAGCAAGG GTCGGTGGAG GCCTTGGAGT CGGCGCTTTC GGCTGATCCC
AGCCACTACT CGGCGGCCCA TGCCCGGTCA CGGCAGTTGG CTCGCCAGGG GCAAAGGGAG
GAGGCTGAAG AGGTTTTCGC ACCGGTGGCC GAAGCCAACC CGGATGCACC GGAGGTGCAC
GCCCATCAGG GTTGGTTGGC GTATCGCGAT GGCCGGTTTG CGCGTGCGGC CGAGCATTAT
GGACACGCCC TCTCAGGTCG TATGGAGCGG TCCTGGGTGC TCGAGGGCTA CACCGCCAAG
CGCGCCGCAG ATGACCTGGA TGCCGGTATC GATCGTCTAA ACGACTGGCT GAGCGCCAAT
CCGGCAGATG CGCAGATGCG CCATGTGCTG GGCTCTGCAC TACTGGAAGC AGGTCGCGAC
GAGGATGCCA TCCAGGTTTA TACGCACCTG TTACAGCAGC GTGAGCAGGA CCCGCTGGCC
TTGAATAACC TGGCGTGGCT TCTGCGCGAG GACGCGCCGG ACCAAGCGCT GGAATACGCC
CGGCGCGCCT ATGACCTGGC CCCGGGGGAG GCTGCCGTGC TGGACACCCT CGGCGTGGTG
CTCCTTCGCA ACGACCGGAC GTCCGATGCG GTTGAGTATC TCGATCAGGC CGTGGCCCTT
GCCGGCGGCG ATCCGGACGT GCAACTCAAT CTTGCCAGGG CGCTTCGTGC TGACGGTCAG
GTGAGCCAAG CCCGTGATAT CCTCGAGCAG TTGCTGGAGG CGCATGCGGA CTTTTCGGGG
CGCCAGGACG CAGAGGAAAT GTTGACGAAC CTCGGCGATT GA
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| Protein sequence | MVGCEAWQGL SEEEYLERAA EQLEAGEYRA AVLDYRNALQ KVETPETRGQ LGLAYAGDGD
TDAAINHLTR ALEQGAEPKR YAPTLARLYH ETRQHGELVD FEYEALEGEA KARVFAYRAV
AAYHRGDDEA GSELLTAAVS EAADLPELEL AKAFGALVAG DRAQAASHLE AAVALDEDYY
PAWTLRGSLA EVVGERQSAR EAFDRAVDLR PDYVSDRFSR AMVRLREEDF EGARADAEQL
VEGAPGFAGG YFLMGLVELE GDSPDEARTQ FEEALARQRE YRPARPYLAG LELERGNLAQ
AEHHLNRYHA SGPGSVTSYT LRARLYMAQD QPEEAREVLS EALAERPEWV SELGDRLGAL
YLDTGDVESG IQTLRRVLDA QPDALETREV LGTALLLAGD EEKGLEELEA VASADGALRA
ADLTLVQAYI EAGRFEAAAV AAERTQDKAP EDPVGYNLRA AVLLGQGDRP GARRVLREGL
EAVPDSADLA MNLSSLERAR GEAEAGIEVL RGVHQAVPDE PRVAMRLAEW LIQMDSAAEG
LSVLEQTLEE RPEDAQFLGE AARIYGMAGE DREARRLLER ATELDPDAAD LHYLLALARA
AAGDEQGSVE ALESALSADP SHYSAAHARS RQLARQGQRE EAEEVFAPVA EANPDAPEVH
AHQGWLAYRD GRFARAAEHY GHALSGRMER SWVLEGYTAK RAADDLDAGI DRLNDWLSAN
PADAQMRHVL GSALLEAGRD EDAIQVYTHL LQQREQDPLA LNNLAWLLRE DAPDQALEYA
RRAYDLAPGE AAVLDTLGVV LLRNDRTSDA VEYLDQAVAL AGGDPDVQLN LARALRADGQ
VSQARDILEQ LLEAHADFSG RQDAEEMLTN LGD
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