| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1124 |
|---|
| Symbol | |
|---|
| ID | 4710086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1220280 |
|---|
| End bp | 1221788 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639855596 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001002702 |
|---|
| Protein GI | 121997915 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.963767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGGCTGG GTGCCTGGCG GATCGGCCTC GCCACCGAGT GTATCGAGCT TTGTCCGCGC
GCCCGGGCCC TCTTTGGCCT GGAGGATCCA ACCCCGCGTC CGGCCAGCGA GGGGCTGGCC
TGCTACGTCT CCGAGCACCG TCAGCAGCTG CAGGACGCCT ATCGCCAGTG CATCGACTAC
GGCACTGCCT ACGACGTCGA ATTCCAGGCC CTGACCGCCG GGGGTGGGCG GCGCTGGCTA
CGGGCGACTG GAACCCCGGT GTATGACGCC GCCGGGCAGA TCACCGCGGT GGCCGGCGCC
CTGCTCGATA TCGACGACTA CAAGGCGCGC GAGGCAGAAC TTGCCGAGGC GCGGGTGGCC
GCCGAGCGGA CCGACCGGGC CAAGTCCGAG TTCCTCTCGG CGATGAGCCA CGAGCTGCGC
ACCCCCCTGA ACGCCATTGT CGGTTTTGCG CAGCTGATCT ACGCCGACGA GGAGCTGGAT
ACACGGACCC GCAACGAGTA CCTGCGCCAT ATCCTCAGTG CCGGCTGGCA CCTGCGTGAT
CTGGTCGGCG ACATCCTGGA CCTGGCACGG ATCGAGGCCG GCAGGGCTTC GCTGGCGCCG
GAAACCGTGC GCATCCCTGA TCTGTTGCAG GATTGCCTGC GCCTGGTGCG GGATCAGGCC
GCCGAGTACA GCGTCAGCCT GCGCCTGGAA GAGCCCGAGC ATCCCGTAGG TGTGTGCGTC
TGGGCGGACC GGCTGCGGCT CAAGCAGGTG GTGCTGAACC TGCTGACCAA CGCCATCAAG
TACAACCGTG AGGGCGGCTC GGTGGTCCTT AGCTACGGGC GCGACGCCGC CGGGCAGGTC
TGGGTCGACG TGGTGGATAG CGGGCTGGGG ATCGACCCGC AGTGCCGCGC CGGCCTGTTC
GAGACCTTCG ACCGCCTGGG GCGCGAGACG GGCAGCATCG AGGGTGTAGG AATCGGGTTG
CCGCTGGCTC TGCGGCTCAG TCGCCTGATG GGCGGTGAGT TGCAACTGGT CGATAGCGTG
CCGGATCAGG GGTCGCGTTT TCGCCTGACG CTGCCGGGGA TCGATGCCGA GGGCTGGGAT
CGGCATCATA CGCCCAGCCT CGACCCACGG TTGATGGAGG AGCGCGCCGA CGACCCGCCG
CTGCGCCTGC TGGCGGTGGA GGACAACCGG GTGAACATGC TGCTGCTCAG CGGTCTGGTG
GCCAAGCGTC AGGGCGTGGA GCTGTTCGAG GCGTTCGATG GACGCACGGG CCTGGAACTG
GCGCAGCGGG TCCAGCCGGA TCTGATCCTG CTCGACATGC ACCTGCCCGA CACTGACGGC
TTCGCCCTGG CCCGGCAGCT GCGCGCCATT TCGGAGCTCG AGGCGGTGCC GCTGGTGGCG
GTCAGCGCCG ACGCCAGCGA TGAAGTGCGC CGCAGGGCCC TGGACGAGGG GTTCAACGAG
TACATCGTCA AGCCCTTCGA GCTGGAGCAG CTCGATGCGC TGATCCGGGA GGTCCGGTTG
AGTCGCTAG
|
|---|
| Protein sequence | MGLGAWRIGL ATECIELCPR ARALFGLEDP TPRPASEGLA CYVSEHRQQL QDAYRQCIDY
GTAYDVEFQA LTAGGGRRWL RATGTPVYDA AGQITAVAGA LLDIDDYKAR EAELAEARVA
AERTDRAKSE FLSAMSHELR TPLNAIVGFA QLIYADEELD TRTRNEYLRH ILSAGWHLRD
LVGDILDLAR IEAGRASLAP ETVRIPDLLQ DCLRLVRDQA AEYSVSLRLE EPEHPVGVCV
WADRLRLKQV VLNLLTNAIK YNREGGSVVL SYGRDAAGQV WVDVVDSGLG IDPQCRAGLF
ETFDRLGRET GSIEGVGIGL PLALRLSRLM GGELQLVDSV PDQGSRFRLT LPGIDAEGWD
RHHTPSLDPR LMEERADDPP LRLLAVEDNR VNMLLLSGLV AKRQGVELFE AFDGRTGLEL
AQRVQPDLIL LDMHLPDTDG FALARQLRAI SELEAVPLVA VSADASDEVR RRALDEGFNE
YIVKPFELEQ LDALIREVRL SR
|
|---|
| |