Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1107 |
Symbol | |
ID | 4710053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 1202590 |
End bp | 1204332 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639855579 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001002685 |
Protein GI | 121997898 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.185203 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCTATTG ATACCGGCGC CGCGAACCCG ACAGAAAACC CACCGGTGCG CGTGGTGCTC TGCTGGCACA TGCACCAGCC GAGTTACCTC GACCCCGGCA CCGGCGACTA CCTGCTGCCG TGGACCTACC TGCACGGCAT CAAGGACTAC GCCGACATGG CGGCCCACCT CGAGGCCAAC CCAGCGGCCC GCGCCGTGGT CAATTTCTCG CCGGTACTCC TGGAGCAGCT GGAGGACTAC AGCCGCCAGA TCGCCGGCTT CCTGGAGAGC GGCGAACGGC TGCGCGACCC CCTGCTGCGC GCCCTGGCCA TGCCCACCCT GCCGGTCAAC AACCCGGAAC GCCGCCAGCT CGTGGAGCAG TGTCAGCGCA TCAACCGCCA GCGGCTGGCG GACCCGTTCC CCGCCTTCCG ACACCTGCTC GAGATCGCCG AGACGGTCAG CGCCCACCCG GCCAGCATGC GCTACCTCAG CGACGCCTTC CTGGTCGACC TGATCACCTG GTACCACCTG GGCTGGATGG GCGAGACGGT GCGCCGCAGC GAACCACGGG TCCAGCGGCT GATCGACAAG GGCGACGGCT TCACCCTCCA CGATCGGCGC GAGCTGCTCG GTGTCATCGG CGAACTGCTC GCGGGACTGC CCCACCGCTA TCGGCACCTG GCCGAGACCG GACGGGTGGA GCTGTCGATG ACACCCTACG CCCACCCGAT CCTGCCCCTA CTCCAGGACC TGCAGTCCGC CCGCGAATCC TGGCCCGCGA GCCCGATGCC GGTGGTCGAT CAATACCCCG GTGGCGAGGA ACGGGCGCGC TGGCACCTGG CGCGCGGCCT GGAGATCTTC GAACACACCT TCGGCCACCG CCCGCACGGC TGCTGGCCGT CGGAGGGGGC CGTCAGCCAG GCCACGCTCG CGCTGCTCCA ATCGTACGGT TTCCGCTGGA CGGCCAGTGG CGGTGCAGTG CTCGACAACA GCCTGGGCGC AGAGGGCGGG GGGAACGGCC AGTGGCACCG CGCCTACACC CTCGCCCCGC AGCACCCCGA AGCCGAGGGC CACGCGGCCA CACGCTGCTT CTTCCGCGAC GACGGACTCT CCGATGCCAT CGGTTTCGAG TTCTCCGACT GGCACGGCGA CGACGCCGTG GCCAACCTGG TCAGCCGCAT GGAGGCCATC GCCGCCGGCT GCGAGGCGCC GGAACAGACC GTGATCTCGG TCATCATGGA CGGTGAGAAC GCCTGGGAGC ACTACCCGGC CAACGGCTTC CATTTCCTGA ACGGGCTCTA CCAGCGCCTG GCCGAACACC CGGGGCTGAT CCTGACCACC TTTGCCGAGG CCGCCGACGA GACCGAACCT CGCGATCTGC AGCGACTGGT GGCCGGCAGC TGGGTCTACG GCACCCTATC CACCTGGATC GGCGAGGTGG ACAAGGACCG CGCCTGGGAG CTCCTCGCCG AGGCCAAGCA GGCCTTCGAT CAGCGCGCCG GGGAACTCGA CGAGGCCACC CGCATCCGGG CCGAGGCGCA GCTGGCCATC TGCGAGAGCT CCGATTGGTT CTGGTGGTTC GGCGACTACA ACCCCGCCGA GGTGATCCGG GACTTCGACC ACCTCTACCG CGTCCAGCTC GCCGCCCTCT ACCACACCCT GGGCCAGGAG CCGCCGGAGC ATCTCAGCCA CGCCTTCGCC CGCCAGGGCC GCGGCCAGCC CGAGCGCGGC GGCGTCATGC GGCACGGACG CGCAGAGCCG TGA
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Protein sequence | MSIDTGAANP TENPPVRVVL CWHMHQPSYL DPGTGDYLLP WTYLHGIKDY ADMAAHLEAN PAARAVVNFS PVLLEQLEDY SRQIAGFLES GERLRDPLLR ALAMPTLPVN NPERRQLVEQ CQRINRQRLA DPFPAFRHLL EIAETVSAHP ASMRYLSDAF LVDLITWYHL GWMGETVRRS EPRVQRLIDK GDGFTLHDRR ELLGVIGELL AGLPHRYRHL AETGRVELSM TPYAHPILPL LQDLQSARES WPASPMPVVD QYPGGEERAR WHLARGLEIF EHTFGHRPHG CWPSEGAVSQ ATLALLQSYG FRWTASGGAV LDNSLGAEGG GNGQWHRAYT LAPQHPEAEG HAATRCFFRD DGLSDAIGFE FSDWHGDDAV ANLVSRMEAI AAGCEAPEQT VISVIMDGEN AWEHYPANGF HFLNGLYQRL AEHPGLILTT FAEAADETEP RDLQRLVAGS WVYGTLSTWI GEVDKDRAWE LLAEAKQAFD QRAGELDEAT RIRAEAQLAI CESSDWFWWF GDYNPAEVIR DFDHLYRVQL AALYHTLGQE PPEHLSHAFA RQGRGQPERG GVMRHGRAEP
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