| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0319 |
|---|
| Symbol | |
|---|
| ID | 4711239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 361141 |
|---|
| End bp | 361740 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639854779 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001001915 |
|---|
| Protein GI | 121997128 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.380813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGTC CCCGCGATGT CACGCCCAGC GCCCCGCGGC GCGGGTCGGA GCTCCCGAGC
GCCCGCCGGC GGGTTGGCGG TCGGCGGCGT GATCCGGCCC CGCATCGGTG GGGCAGTGGG
GCGGTTACAG CGCGCCACCG GGGCGTAACC CTCATCGAAC TCATCCTGGT CCTGGTGATC
CTCAGCATCC TGGCCGGCAT CGCCGCCCCG CGCCTGGGCG GCTTCACCGA CGGCCCCAGC
GTGAACGCCG TCAAGAACGG CCTGATCAGC GACCTGCGCA GCGCGCGGGG CAAGGCCATG
GCGTGTAGTG GGGCGGATTT GAAGGTGGAT CTGGGTCGTG CTTGGGCGAT GACTTGGGAG
TCCTCGGGCG ACGGTTGCGG CCCCCTACGG GGGCTGACGG AGCGGGATGG CGTGACGGTG
ACCAGTTCGC CCGATGCTTT CCGCCTGACC TATCCGCACG GCGAGCTGGT GGCTGACGAT
GGCGGAGAAA TCAACGACAA ATCCTTCGAG GTCGCGCTTA GTAAGGGGGA CGCCTCCCGA
ACGATGTGTG TTCGTGTAGC GACCGGCAGT GTCACCCGGG GGGAATGCAA TGAAGACTAG
|
|---|
| Protein sequence | MPRPRDVTPS APRRGSELPS ARRRVGGRRR DPAPHRWGSG AVTARHRGVT LIELILVLVI
LSILAGIAAP RLGGFTDGPS VNAVKNGLIS DLRSARGKAM ACSGADLKVD LGRAWAMTWE
SSGDGCGPLR GLTERDGVTV TSSPDAFRLT YPHGELVADD GGEINDKSFE VALSKGDASR
TMCVRVATGS VTRGECNED
|
|---|
| |