| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0228 |
|---|
| Symbol | |
|---|
| ID | 4711088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 262531 |
|---|
| End bp | 264024 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639854687 |
|---|
| Product | putative signal transduction protein |
|---|
| Protein accession | YP_001001824 |
|---|
| Protein GI | 121997037 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.671698 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAG TCTTTGAACA CCCCCGGCAG CGGCTGGAGG ACTGGGTCGC GGCCATCGGC
GGGCCGCGGC TACCGCGCCT GCCCCGGCAC ACACTGGATT ACGAACTGCC GCCCCGCGAC
CTGGCCGCAC AGATCTATGT GGACCCGGCC CTGGTCCTGG GGCTGATCCA CGACGTCAAC
ACCCACGCCT CGCGCCACCT CGACTCGGGC GTGCACAGCA TGGAAGAAGC CGTGCTGCTG
CGCGGGGTGC GCAACATCCG CGCAGTGGCC GACGGCCTGC CCCAGGCCGA GCAGGCCCTG
ACCCGGGCCA ACTACCGCGG CTACCTGTTC ACCTGCGAGC GGGCCATCCA CGCCGCCTGC
CAGGCCCGGC GCTGGGCGTG GCAGCTGGCC GACCTACTCC CCAACGAGGT CTACACCGCC
GCCCTCCTGC GCCACACCGC CGAGTTGGTC ATGTGGAGCC ACGACGACGG GCAGGTAATG
CGCACCATCC ACGAGATGGC CCCGGAGCCG GCCTACGCCT CGGAGGCCGA GTACGTCGCC
CTCGGTTTCT CCCTGGGCGA GCTCAACCTG GCCCTGGCCC AGCAGTGGCA ACTACCCGGC
CTGGTGGCCG AATCCAGCGA GGCGCTGGCC GCCGACACCC GTTCGCCGCG CAGCTGGGCG
GTGGGTCTGG CCTCGCGCCT GGCCGCCCTG GCCCGCCAGG GCTGGCGCCA CCCGGAGATG
CCGCCCCTGC TCGACGCCCT CTCGGAGCTG CTGGAGCTCG ACCACGAGGC CACCCAGGCC
GAGATCTCCG CCGGCGCTGC CGAGGCCGCC GCGCTGCTGC CCTGGAAGCC CGTGACCTTC
GCCCCGCTGC TCACCGAGGG CGAGGAAGAC GGCGAGGCCC GCGCGCCGAT CAGCGAGACC
TCGGACAACC CCTACCTCTC CGACGGCACC GCCAAGGGCG GCGTCTGCCT CGCCCCCCGC
CGCGCGGTGT TCGAGCGGGT GCGCAGCGAG CTCGAGACGC AGGATTACGC CCGCTCCGAG
GCGCAGATGC GCCGCCGGCA GGGGCGGGTC ACGCCCCGCG ATTGCATCCT CAACCTGGTG
GTCACCGGGC TCTACGAAGG CCTCGGCCTG AGCCGGGTGC TCTACGCCCA GATGCTCCCC
GACGGCGAAA CCCTGGCCGG ACGGTACGTC CTCGGCGCCG CCGGCGATCC GAACTTCCAC
CGCTTCCGGG TGGACCTCGC CCGCCCCTCG CTCCTGCAGG AACTGATGGC GAAGCCGGCG
GCGGTGTGGC TGACGCCGCA GCGCTACCAG CGCGTCCAGC ACCGGATCCC CCCCGCCCTG
CACGCCCTCG CCGACGGCCG CTCGGCCTTC CTGGCCGCAA TCTTCGCCGG CGGCCAGCCC
CAGGGGATGG TCTACGCCGA CCGCCACCGC ATCGACAACG CCCTCGACGA GGCGAGTTTC
AAGGCCTTCC GGCGGCTCTG CGCCCTTGGC GGCCAGCGGC TCGCCGAGCT GTAA
|
|---|
| Protein sequence | MDKVFEHPRQ RLEDWVAAIG GPRLPRLPRH TLDYELPPRD LAAQIYVDPA LVLGLIHDVN
THASRHLDSG VHSMEEAVLL RGVRNIRAVA DGLPQAEQAL TRANYRGYLF TCERAIHAAC
QARRWAWQLA DLLPNEVYTA ALLRHTAELV MWSHDDGQVM RTIHEMAPEP AYASEAEYVA
LGFSLGELNL ALAQQWQLPG LVAESSEALA ADTRSPRSWA VGLASRLAAL ARQGWRHPEM
PPLLDALSEL LELDHEATQA EISAGAAEAA ALLPWKPVTF APLLTEGEED GEARAPISET
SDNPYLSDGT AKGGVCLAPR RAVFERVRSE LETQDYARSE AQMRRRQGRV TPRDCILNLV
VTGLYEGLGL SRVLYAQMLP DGETLAGRYV LGAAGDPNFH RFRVDLARPS LLQELMAKPA
AVWLTPQRYQ RVQHRIPPAL HALADGRSAF LAAIFAGGQP QGMVYADRHR IDNALDEASF
KAFRRLCALG GQRLAEL
|
|---|
| |