| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0165 |
|---|
| Symbol | |
|---|
| ID | 4710813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 193930 |
|---|
| End bp | 195282 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639854623 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001001761 |
|---|
| Protein GI | 121996974 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCA CGGCATTGCT CCAACGACCG GTCTGGGCGG AAGGCGTATT GCTGGGGCAG
CAGCACTTCC AGTGCTGGGA GCGCTATCTC GAGGCGGCCC AGGCGCGTCG CCTCAGTGCG
GTTACCCCTC ACGCCTACGG CCTGCTGGGC CTTGTGGTCG AAGAGGCCCC CCTGGAACAG
GGCGTGCTCC GGCTTCAGGC CTGCCAGGCG CTGCTGCCGG ACGGGCGTTT GGTCGCCCAT
GGCCACGGTG ATCCCCTGGA GCTGGATCTG ACCGGCTCAT CGGGGCAGGA AGGCGTCGTC
TACCTGACGC TGCCGCGCAA CAATCGCGTC CGTGATCTGC CCGGCTACGC CGATGGGGGG
AGCAGCGCAG CCTGGCGGCC GCGTTTCGTG CAGCTCGCCG ATCAACACGA CGAGCAGCGC
GAGCGTGAAG TCCTGCTTGC CGACCCGGAG CTGGCGCTGG GGACGCAGCC GCCATCGGGT
GCCCGGGTCG GACTGCCCGT GGCGCGTGTG GTGCCAGGCG ATGCAGGTGG GTTTCGTCTC
GATCCGGCGT TTTTGCCCGT CGCCTGCCGG CTGGATGCTT CCACTGGATG GCAGACGCTG
CTCGGGCGCA TCACAGCCCG CGTAGAGAAC CGCTGTGCCC GTCTGCGCGA AGAACAGGGG
GCCACCGGGC GGGTCAGCGC CTTCGAACCG GGCGAGGTGG CGCGGCTGTT GCTGCGCCAG
AGCCTGGAGC CGGCGGCCTG CGCCCTGCGC TCGTTGGTCG CCAACCCCGC CAGTCACCCC
GGGCAGCTTT ACGACATCCT CGCCCGCCTG GTGGCAGCGC TGTCGGCGCT CTCCGAGGTG
ACCTCGCCGG CCGAGACGGT ACCGGTCTAC GATCACGACC GTCCGGCTGC CGTGTTTACC
GCGCTGGAGG AGGGGCTGGA GCGCCTGCTG GATCAGGCCA TGCCTCGCCA GACCCGCGGT
GTCCGCCTGG TTTGCGAGTC CGAGGCCGTG CTGGTGACCG AGGGTGCGGA GCAGCCGCTG
ATGGAGGGGT GGACCTTCTT CCTGGCCGTG CACGGCGCGG CCGACCCGGC TGGCGACTGG
ATCGCGCGCC TGCCCATGGA TCTGCGCGTC GGCCCGCGGG AGGCCCTCGA GCGTCTGGTC
GCCGCCGGGG TGGCCGGTGT GCGCCTGGTC CATGCCCCCA GGCCGCCCGG GCAACTGCCG
GTCAAGAGCG GCTACGAGTA CTTCCGGTTG GAGCCGGCCG GGGAGCATTG GGAGCAGGCC
CAGCGTGCGG GGGGACTGGC CGTGTACCGA CCGGCCGAAC TGGCCCACCT GCGGATGGAG
ATGGTGGCGC TGCGCGAGGA GGAGAACCCA TGA
|
|---|
| Protein sequence | MDVTALLQRP VWAEGVLLGQ QHFQCWERYL EAAQARRLSA VTPHAYGLLG LVVEEAPLEQ
GVLRLQACQA LLPDGRLVAH GHGDPLELDL TGSSGQEGVV YLTLPRNNRV RDLPGYADGG
SSAAWRPRFV QLADQHDEQR EREVLLADPE LALGTQPPSG ARVGLPVARV VPGDAGGFRL
DPAFLPVACR LDASTGWQTL LGRITARVEN RCARLREEQG ATGRVSAFEP GEVARLLLRQ
SLEPAACALR SLVANPASHP GQLYDILARL VAALSALSEV TSPAETVPVY DHDRPAAVFT
ALEEGLERLL DQAMPRQTRG VRLVCESEAV LVTEGAEQPL MEGWTFFLAV HGAADPAGDW
IARLPMDLRV GPREALERLV AAGVAGVRLV HAPRPPGQLP VKSGYEYFRL EPAGEHWEQA
QRAGGLAVYR PAELAHLRME MVALREEENP
|
|---|
| |