| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4369 |
|---|
| Symbol | |
|---|
| ID | 4694053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4817412 |
|---|
| End bp | 4818341 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639852115 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_999090 |
|---|
| Protein GI | 121611283 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.259898 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCCC ATGCCGTGAT GCGGCCGCTA CCCCCTTGTC CGGCGACAAT CCGGGCGGTG
AACCAACGCT TCGATTCCAT GCCCGGCGCC GCCACGGCCG CGCCGGTGAC GCATTACGAG
AATTTCCCGG TGGCGTCGCT GCTCTGCCCG GCGCCGTTGC GCCAGCCGAT TGCCGCCATC
TATGCCTTTG CGCGCACCGC CGACGACATC GCCGACGAGG GCGACGCCCC CGCTGCCAGC
CGTCTGGCGG ACTTGGCCGC CTACCAGGCC GACCTGCAGG CCATTGCGCG GGATCTGCCG
CCCTCGCCCC GATGGCCCGG GGTGTTCGTG CCGCTGCGCG CCTGGCTGCG CAGCCGGCAT
TTGCCGCTGC CGCTGCTGGC CGACCTGCTG AGCGCCTTTG TCCAAGATGT GGAGAAAACC
CGGGATGGCG CAGGCTATGC CGACCGCGCC GAACTGCTGG ACTATTGCCG CCGCTCCGCC
AACCCCGTGG GCCGCCTGTT ATTGCACCTG TATCGCGTGA CGGACGCCCG GTCGCTGCAA
GAAAGCGACG CCATCTGCAC CGCCTTGCAA CTGACCAACT TCTGGCAAGA CCTGAGCCTG
GACATCCCGC GCGGGCGCTA CTACCTGCCG CGCGCCGATT GCGCCGCGCA TGGCGTCAGC
CCGGCGCAGC TACTGGCGCT GCATGGCACC CCGCAGAGCG CCCGCCTGAT CGCTGACTGC
ATCGACTGGG CCCGCGCCTG CATGCACGGC GGCGCCCCGC TGGTGCACCG CCTGCCCGGC
CGCGCAGGCT GGGAACTGCG CCTGGTCGTG CAAGGCGGCC TGCGCATTCT CGACAAGCTC
GACGCGCTCC AGGGCCGCAA CCTGCGCATT CGCCCCCGGC TGCATGCCCG GGACTGGTGG
GGCATGATCG GCCGCGCGTT GGTGATGTGA
|
|---|
| Protein sequence | MQAHAVMRPL PPCPATIRAV NQRFDSMPGA ATAAPVTHYE NFPVASLLCP APLRQPIAAI
YAFARTADDI ADEGDAPAAS RLADLAAYQA DLQAIARDLP PSPRWPGVFV PLRAWLRSRH
LPLPLLADLL SAFVQDVEKT RDGAGYADRA ELLDYCRRSA NPVGRLLLHL YRVTDARSLQ
ESDAICTALQ LTNFWQDLSL DIPRGRYYLP RADCAAHGVS PAQLLALHGT PQSARLIADC
IDWARACMHG GAPLVHRLPG RAGWELRLVV QGGLRILDKL DALQGRNLRI RPRLHARDWW
GMIGRALVM
|
|---|
| |