| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_0346 |
|---|
| Symbol | |
|---|
| ID | 4676845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008784 |
|---|
| Strand | - |
|---|
| Start bp | 362571 |
|---|
| End bp | 364061 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639842874 |
|---|
| Product | amino acid permease |
|---|
| Protein accession | YP_989957 |
|---|
| Protein GI | 121597659 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.362616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGATT GGTCGGGTTA TTCGAATGCG GCGGCCGGAT CGGCGGCGGT CGGCGCGGGC
GGGCGGCCCG CGCTGGCGGC GGGCGCGGTG GGCTTTCCGA CGGCGCTCGC GAGCGCCGTC
GGCCTCATCA TGGCGAGCCC GGTGATCCTG ACCGCGACGT CCGGCTTCGG GATGGGCGGC
TGGGCGTTCG CGGCCGCGAT GCTCATCGCG TTCGTGATGA TGCAGGCGCA GGCGACGACG
TTTGCCGAGG CGGCGGCGAT GCTGCCGACG GCGGGCTCCG TCTACGACTA CCTGTCGTGC
GGGCTCGGCC GCTTCTGGGC GATCACGGGC ACGATCTCCG CGTACTTTCT CGTTCACGTG
TTCGCCGGCA CGGCGGAGAC GATCCTGAGC GGCATCATGG CGCTCGTGAA CTTCGAATCG
CTGAACGCGG CGTTCGAGCG GCACGACAGC GCATGGCTCG TCGGCGTCGG CCTCGTCGCG
ACGTTCGCGT TCACCAACAT CATCGGTATC AAGGTGTTCA GCAAGCTCGA GATCGTGTTG
ACGGTCGGCA TGTGGCTGTC GCTGACGATT TTCGGCGTGC TCGGGCTCGT CGCCGCGCCC
GCCGTGCAGC TCGACGGCTG GTTCGGGCGC TCGGAGATCG GCGCGTCCGC GCCCGCCGTG
CTGTCGCTCG TCGGGATGGC GATGTTCATG TTCGTCGGCT GCGAGTTCGT CACGCCGCTC
GCGCCGGAAA TGAAAACGCC CGGCAAGACG ATTCCGCGCG CGATGGCGCT CGGGCTCGCG
GGCGTCGCGG TCTGCATGTT CGTCTACGGC GCGGCGATCA AGCGGCAGGT GCCGAACGTC
GCGGTGACGG CGGACGGCCT CACGCATCTG CTCGACACGC CCGGCGCGAT TCCCGCGTTC
GCGTTGCAGG TGCTCGGCCC GTTCGGGCGG GCATGGTTCG GCATCGCGTT CCTGTGCGCC
GGCGCGGCGA CGATCAACAC GCTGATGGCC GGCCTGCCGC GGATCCTGTA CGGCATGGCC
ATCGACGGCG CGCTGCCGAA ATGCTTCGCG TACCTGCATC CGCGCTTTCG CACGCCGGTC
GTCGGCATCG TCGCGGCGGC CGTCGTGCCG ATCGCGCACG CGTGGATCAT CCACGGCGAT
CTCGGCAGCA TCATGCACCT CGTGCTCGCC GCGACCTGCG CGTGGGGCAC CGCGTACCTG
CTCGTCACGC TGTCCGTCGT GATGCTCAGG ATTCGCCGCC CGGACCTGCC GCGGCCGTAC
CGGTCGCCCT GGTTTCCGCT GCCGCAGATC GTGTCGAGCG TCGGCATCGT GCTCGCGATC
TGGTATATCG CGCCGCCGGG GACGAACAGC CGCGACATCT ACGTGCCGTT CGGCGCGATG
CTCGGGCTCA CCGCGCTCTA TGCGCTGTTC TGGACGATCG TCGTGCAGCG CAAGCATCCG
TTCCGGCCGG TGCCGGTTGA AGAGGTGCTG CGCAACGAGT GCGTGCGATG A
|
|---|
| Protein sequence | MADWSGYSNA AAGSAAVGAG GRPALAAGAV GFPTALASAV GLIMASPVIL TATSGFGMGG
WAFAAAMLIA FVMMQAQATT FAEAAAMLPT AGSVYDYLSC GLGRFWAITG TISAYFLVHV
FAGTAETILS GIMALVNFES LNAAFERHDS AWLVGVGLVA TFAFTNIIGI KVFSKLEIVL
TVGMWLSLTI FGVLGLVAAP AVQLDGWFGR SEIGASAPAV LSLVGMAMFM FVGCEFVTPL
APEMKTPGKT IPRAMALGLA GVAVCMFVYG AAIKRQVPNV AVTADGLTHL LDTPGAIPAF
ALQVLGPFGR AWFGIAFLCA GAATINTLMA GLPRILYGMA IDGALPKCFA YLHPRFRTPV
VGIVAAAVVP IAHAWIIHGD LGSIMHLVLA ATCAWGTAYL LVTLSVVMLR IRRPDLPRPY
RSPWFPLPQI VSSVGIVLAI WYIAPPGTNS RDIYVPFGAM LGLTALYALF WTIVVQRKHP
FRPVPVEEVL RNECVR
|
|---|
| |