| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3604 |
|---|
| Symbol | |
|---|
| ID | 4673592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3802582 |
|---|
| End bp | 3803850 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639840636 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_987792 |
|---|
| Protein GI | 121595896 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0147385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACA ACATCGCCGA CTTGATCGAC AAGATTCGCC TGGGAGAGGA CTCCTATCTG
GAGTTGAAGG AAGTCCGCTT TGCTGGCCAA AAGGTGTCAG CACCCCATAA AGATTCGCTG
GCCGATGAGC TGGCCGCTTT CGCCAACAGC CGGGGTGGTG TGTGCGTGCT CGGCGTGGAC
GACACCCGTG AAGTGCTCGG TATCCCGCTG GAGCGCTTGG ACCTGGTGGA GGATTTCGTC
CGGCAGATTT GCCTGGACAG CATCACCCCG CCGCTCGCGC CGGTGATCGA GCGTCTGAGC
CTGCCCAGCA CGTCAGGCGA GCCCTTGCCT GTATTGAAAG TCGATATCGC AAGCAGCCTG
TTCGTGCATA AAAGCCCCGG CGGCTATTTG CACCGCGTGG GCAGCGCCAA GCGTGAAATG
GCTCCGGACT ATCTGGCGCG GCTGTTCCAG CAACGCAGCC AGGCGCGCAT CATCCGCTTC
GACGAGCAGC CGGTGCCTGG CGCCACGCTC GATGACCTTG CAGATGACCT CTGGCAACGT
TTTGCCAGTC CTCGCGTGCA AGATACGCGT GCGGTGCTGC TGGATAAACT GGCCATGGCG
CGCCCCGATA CCGACGGCGC ACTTCGGCCA ACCATCGCCG GCGTGCTGAT GGCCAGCGCA
GATCCCCGCC GCTGGCTGCC AAATGCCTTC ATTCAGGCGG TGGCCTACCG TGGCACCGAG
GTGCTGCCGC AAGGCGACAC GGCCTATCAG CTCGACGCCC AGGACATCAC CGGGCCGCTG
GATGCCCAGG TGCTGGCGGC TTGCCACTTC GTCCGCAAGA ACATGCAGGT CTATGCCACC
AAGGATGAGG GCAGGCACGA TCTGCCGCAG TACGACATGA CCGCCGTCTT CGAGGCCCTG
GTCAATGCCG TTGCACACCG GGATTACTCG ATCCATGGCG CCAAAATCCG CCTGCGGATG
TTTGCGGACC GGCTGGAGCT GTATTCGCCA GGCGCCATCC CCAACACCAT GACGGTGGAG
AGCCTTCCCT ACCGCCAGGC CGCGCGAAAC GAAGCCATCA CCAGCCTGCT GGCCAAATGT
TCCGTGCCCG AGGCGGACAA AGCGATCACA GGCCGCAGCG CCATGATGGA CAAGCGTGGT
GAAGGGGTTC AGATCATTCT GGATCAAAGT GAACGGCTGT CCGGCAAGCG GCCGGTTTAC
AGGCTAGTGG ATGACTCCGA GCTGTTGTTG ATCATCCCTG CTGCCGAGCC TCCCGCAGCA
GTTGAGTGA
|
|---|
| Protein sequence | MFDNIADLID KIRLGEDSYL ELKEVRFAGQ KVSAPHKDSL ADELAAFANS RGGVCVLGVD
DTREVLGIPL ERLDLVEDFV RQICLDSITP PLAPVIERLS LPSTSGEPLP VLKVDIASSL
FVHKSPGGYL HRVGSAKREM APDYLARLFQ QRSQARIIRF DEQPVPGATL DDLADDLWQR
FASPRVQDTR AVLLDKLAMA RPDTDGALRP TIAGVLMASA DPRRWLPNAF IQAVAYRGTE
VLPQGDTAYQ LDAQDITGPL DAQVLAACHF VRKNMQVYAT KDEGRHDLPQ YDMTAVFEAL
VNAVAHRDYS IHGAKIRLRM FADRLELYSP GAIPNTMTVE SLPYRQAARN EAITSLLAKC
SVPEADKAIT GRSAMMDKRG EGVQIILDQS ERLSGKRPVY RLVDDSELLL IIPAAEPPAA
VE
|
|---|
| |