Gene Ajs_3273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3273 
Symbol 
ID4673750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3459089 
End bp3459712 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content65% 
IMG OID639840313 
Productanti sigma-E protein, RseA 
Protein accessionYP_987472 
Protein GI121595576 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.221066 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.389812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGACG ACATGATGAT GCGAGAACAG CTGTCGGCTT TGGCCGATGG GGAGTTGCAG 
GGCGAAGAAT TTGCGCACGC GCTCACCTAT GCCGCGAACG CCGAGGGGCG GGCGACGTGG
CAGCTCTACC ATTTGATAGG TGACACCCTG CGCAGTTCTG AAGCAGCCGG TATGGGAGAC
CTTGAACTCG TAGACTGCCT GCGCACGCAA CTGGCGCGCG AACCGGCGCC CCGCTTGGCG
GCCGTGGAAG TAGGTCACGT GGCCTCTATG AAGGCGGGGC GGACGAAAGA CAACGCAGCC
AACGCCGCAG TGTTCCGCTG GAAGGTGGCG GCAGGGTTCG CGTCGTTTGC CGCAGTCGCG
GCTGTTGGAT GGAGTGTCTA TCTGGGCGCC GAAGGTGACG GCCGCGCGGC AGGCGCGCAA
TTGGCGGCGG CCCAGCCAGC CATGACGGCC ACGGCGCCCG CTCTGCTGGT CACAGCCGCC
GGCCCTGATG GGCAACAGGT CATGTTGCGT GATCCGCGTC TGGATGAGTT GCTCGCAGCG
CACAAGCAGT TTGGCAGCAC GACTGCACTG CAGATGCCGG CAGGCTTCCT GCGGAACGCC
ACGTTTGAAG CGCCTGCGCG CTGA
 
Protein sequence
MNDDMMMREQ LSALADGELQ GEEFAHALTY AANAEGRATW QLYHLIGDTL RSSEAAGMGD 
LELVDCLRTQ LAREPAPRLA AVEVGHVASM KAGRTKDNAA NAAVFRWKVA AGFASFAAVA
AVGWSVYLGA EGDGRAAGAQ LAAAQPAMTA TAPALLVTAA GPDGQQVMLR DPRLDELLAA
HKQFGSTTAL QMPAGFLRNA TFEAPAR