Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3234 |
Symbol | |
ID | 4671487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 3416971 |
End bp | 3417744 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639840274 |
Product | short chain dehydrogenase |
Protein accession | YP_987433 |
Protein GI | 121595537 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.458923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCCACC AACCGTCCCT CTCCCATCGC GTCGCCATCG TCACCGGCGC CAGTTCCGGC ATCGGCCGCG CAGCGGCCCT GCTTTTCGCG GAGGCCGGCG CGGCCGTCGT CGTGGGCGCA CGGCGCCAAG CGGAGCTGGA CCAACTCGTC GCTGCCATCA CCCAGCAGGG AGGGTCGGCT GCGGCAATGG CCGGCGACGT GCGCGACGAG GCCTACGCAC AAGCGCTCGT CGCCACTGCC GTGGAGCGTT TTGGCGGCCT CGATATCGCC TTCAACAACG CGGGCACCAT GGGGCCGCTG CAACCCACGC CGGACGTGCA GTCGAGCGAT GGGCGCGACA CCCTGGAGAC CAACCTCACC AGTGCCTTCC TGGGCGCCAA GCACCAGATT CCCGCAATGC TGGCGCGCGG AGGTGGCTCG ATCATCCTCA CCTCCACCTT CGTGGGGTAT ACCGCCGCAT TTGCGGGCAC GGCCGCGTAT GCCGCGAGCA AGGCCGGCCT GATCGGCCTG ACCCAGGCAC TGGCCACGGA GTTCGGAGCG AAGGCCATCC GTGTGAATGC CTTGCTGCCC GGCGGCACCC TCACCCCCAT GGCGCGCACC ATGAACGGAA CACCCGAGGC GCTGGCCCAG GTCGCCCAAC TGCATGCACT CAAGCGCCTG GCGCAGCCCC GGGAGATTGC CCAGGCCGCG TTGTACCTGG CGTCCGACGC GGCATCGTTC GTCACCGGGA CAGCCATGCT GGTGGATGGC GGGGTGTCCA TCCAGCGGGG ATGA
|
Protein sequence | MSHQPSLSHR VAIVTGASSG IGRAAALLFA EAGAAVVVGA RRQAELDQLV AAITQQGGSA AAMAGDVRDE AYAQALVATA VERFGGLDIA FNNAGTMGPL QPTPDVQSSD GRDTLETNLT SAFLGAKHQI PAMLARGGGS IILTSTFVGY TAAFAGTAAY AASKAGLIGL TQALATEFGA KAIRVNALLP GGTLTPMART MNGTPEALAQ VAQLHALKRL AQPREIAQAA LYLASDAASF VTGTAMLVDG GVSIQRG
|
| |