| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3029 |
|---|
| Symbol | |
|---|
| ID | 4674257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3195058 |
|---|
| End bp | 3196209 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639840079 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_987239 |
|---|
| Protein GI | 121595343 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases
[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACA AACAGATCAA CATGCAAACC ATCCTGATCA CCGGCGCCAA CGGCTTTGTG
GGCCAAAACC TGCAACTGCA CCTGTCGGAG CGCAAAGGCC TACATGTGCG TTGCTTTACC
CGCGCCAACA CCGTGGCCGA ATTGCCAGCG CTGCTTGATG GGGTGGACTT TGTCATTCAC
CTCGCCGGGG TGAACCGCCC GCAAGACCCG GCAGAGTTTG CAACCGGCAA TACCGACTTG
ACACAGGCGC TGGCCACTGC GGTTGCCGAT GTGGCGGTGC GCACGGGCAA GAAGGTGCCG
GTGCTCTATA CCTCGTCCAC GCAGGCCGCG CGCGACAACC CTTACGGCCA AAGCAAGCGC
GCGGCAGAAG ACGCGCTGTT TACGCTGCAG CGCGCGCATG GGGTGCCGGT GCATGTGTTT
CGTCTGCCCA ATGTGTTTGG CAAGTGGTGC AAGCCTAACT ACAACTCGGC AGTGGCCACT
TTCTGCCACA ACATTGCCCG CGGCTTGCCC ATTACCGTGA ACGACCCGGC GGCGCCGGTC
ACGCTGGTGT ATGTGGATGA CGTGATTGCG CGCTTCGTGC ACATCATGGA CGGCGCCGAT
CCCGCACTGG ACGCCCAGGG CTTTGCCACC GTGGCACCGC AATACACCAC CACCGTGGGC
GAGCTGGCGT GCACCATCCA ATCGTTCAAG GACAGCCGCC AGACCCTGAT GACCGAGCGG
GTGGGCACCG GGTTCATGCG GGCGCTGTAC GCCACTTATG TCAGCTATTT GCCGGTAGAG
GCCTTTACCT ACACCGTGCC CATGTACGGC GACCCACGCG GGGTGTTTGC CGAAATGCTC
AAAACGCCCG ACTGTGGCCA GTTCAGCTAT TTCACGGCGC ACCCGGGCAT TACCCGGGGC
GGCCATTACC ACCACACCAA GACCGAGAAG TTTTTGGTGA TCAAGGGCCA GGCCCGCTTC
AAGTTCCGCC ACATGCAAAC CGGCGAAACC CACGAGCTGG TCACCCGTGG TGACAAGGCC
GAAATCGTCG AAACCGTGCC AGGCTGGACG CACGACATCA CCAACATCGG CCAGGACGAA
ATGGTGGTGA TGCTGTGGGC CAACGAGGTG TTTGACCGCC AAAGGCCGGA TACGTTTGCG
TGCCCGCTAT GA
|
|---|
| Protein sequence | MNDKQINMQT ILITGANGFV GQNLQLHLSE RKGLHVRCFT RANTVAELPA LLDGVDFVIH
LAGVNRPQDP AEFATGNTDL TQALATAVAD VAVRTGKKVP VLYTSSTQAA RDNPYGQSKR
AAEDALFTLQ RAHGVPVHVF RLPNVFGKWC KPNYNSAVAT FCHNIARGLP ITVNDPAAPV
TLVYVDDVIA RFVHIMDGAD PALDAQGFAT VAPQYTTTVG ELACTIQSFK DSRQTLMTER
VGTGFMRALY ATYVSYLPVE AFTYTVPMYG DPRGVFAEML KTPDCGQFSY FTAHPGITRG
GHYHHTKTEK FLVIKGQARF KFRHMQTGET HELVTRGDKA EIVETVPGWT HDITNIGQDE
MVVMLWANEV FDRQRPDTFA CPL
|
|---|
| |