| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2929 |
|---|
| Symbol | |
|---|
| ID | 4672997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3103047 |
|---|
| End bp | 3103658 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639839983 |
|---|
| Product | TraF peptidase |
|---|
| Protein accession | YP_987143 |
|---|
| Protein GI | 121595247 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.16718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG TTTCCACTGG CGCCAACACC TCTGGAAAGG CGCCGCGTCT TCACTCGCAC
GCCCGCTCAC GCATGCGCGC TCGTATCGTT CTCTCGGGCC TCGCCGCCTG CGGCCTCGCT
GCGCTGGCCT GGGCGTACTT CGTGCATCCG CTGCCGCGCC TGATCTACAA CCCGTCCGAC
AGCGTGGCGG TCGGCTGGTA TCGCGTCGAT CCGCTGCACC ATCGGCCCTG CTCGCTGCCA
CGTCCTTTGT CCGTGGACAC CATCGTCCTG ACCACGCTGC CGCCAGATGC CGCTGCGCTG
GCTGCGCAGC GCGGCTACCT GCCGGCCCGC ATTCCGCTGC TCAAGCGCGT GGGGGCCATC
GCACCGCAGC ACGTTTGCGT TTTCGATGCG CTGGTGTGGA TCGAAGGCGT GCCGGTGGCT
ACCGTTCGGC CCGCCGACCG GCTGGGCCGT CCGCTGCCAT CCTGGCCGCA GTGCCGGCAG
CTTCGGCCTG GCGAACTGTT CCTGCTCAGT TCGACCAATC CAGCGTCGTT CGACAGCCGG
TATTTCGGGC CGGTCAGCGC ATCCGCCGTG ATCGGCGTCG CGCGCCCGAT CTGGCTGGAG
GCCCGCCCAT GA
|
|---|
| Protein sequence | MTAVSTGANT SGKAPRLHSH ARSRMRARIV LSGLAACGLA ALAWAYFVHP LPRLIYNPSD
SVAVGWYRVD PLHHRPCSLP RPLSVDTIVL TTLPPDAAAL AAQRGYLPAR IPLLKRVGAI
APQHVCVFDA LVWIEGVPVA TVRPADRLGR PLPSWPQCRQ LRPGELFLLS STNPASFDSR
YFGPVSASAV IGVARPIWLE ARP
|
|---|
| |