| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2658 |
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| Symbol | |
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| ID | 4674490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 2823430 |
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| End bp | 2824029 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639839722 |
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| Product | putative conjugal transfer TRAF transmembrane protein |
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| Protein accession | YP_986886 |
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| Protein GI | 121594990 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.1862 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGGCCC AATCCACCAC CGCGCGCACG CCCGGAGCCG CGCCGCATCC TCGCTCGCGC
CCGCGCGCTC GCCTCGTGCT GGCGGGCTTC GCCGCCGTCG GCCTCGCTGC GCTGGCCTGG
GCGGCGTTCG TGCAGCCGCT GCCGCGCCTG ATCTACAACC CGTCCGACAG CGTTCCGGTC
GGCTGGTATC GCGTTGATCC GATCCAACAC CGGGCCGGCT CGCTGGCACG TTCGTTGTCC
GTGGGCAGCA TCGTCCTGAC CCAATTGCCT GCCGACGGTG CCGCGCTCGC TGCGCAGCGC
GGTTACCTGC CGGCACACGT TCCGTTGCTC AAACGTGTGG GCGCGGTCGC GCCGCAACAC
GTCTGCATCG TCGCCGGGCA GGTACGCATC GACGGCGTGC CGGTGGCCGC CGCGCTGCCT
GCCGACCGAC TGGGCCGGCC GCTGCCATCC TTGCAGCTTT GCCGCTGCCT CGAACCGGGC
GAGCTGTTCC TGTTGAGCGT GACCAATCCG GCATCGTTCG ACAGCCGCTA TTTCGGCCCG
GTCAGCGCAT CCGCCGTGAT CGGCATCGCG CATCCGGTCT GGCTGGAGAC ACGCCCATGA
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| Protein sequence | MTAQSTTART PGAAPHPRSR PRARLVLAGF AAVGLAALAW AAFVQPLPRL IYNPSDSVPV
GWYRVDPIQH RAGSLARSLS VGSIVLTQLP ADGAALAAQR GYLPAHVPLL KRVGAVAPQH
VCIVAGQVRI DGVPVAAALP ADRLGRPLPS LQLCRCLEPG ELFLLSVTNP ASFDSRYFGP
VSASAVIGIA HPVWLETRP
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