| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0826 |
|---|
| Symbol | |
|---|
| ID | 4672114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 867344 |
|---|
| End bp | 868051 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639837948 |
|---|
| Product | DNA ligase III-like protein |
|---|
| Protein accession | YP_985144 |
|---|
| Protein GI | 121593248 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1423] ATP-dependent DNA ligase, homolog of eukaryotic ligase III |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.771105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAGG ATTTCTTCCG TTTCCCCACC ACTTCGCACC TCGCCTGGCT GGCCAAGGAC
GGCATGCCAC GTGACGACAA GGTGTTGTCG CCCGCCGAAA CGCAGGAGCT GTTGTCCGGG
GACGTGGTCG TAGAGGAAAA GCTTGACGGT GCGAACCTGG GTCTGTCTCT GTCGCCAGAT
GGCGCACTAC GCGCTCAAAA TCGTGGCCAG TATCTGAGCG CTCCCCATGC GGGGCAGTTC
GCGCGCTTTC CCGCTTGGCT GACGCAACAT GAATCCGGCT TGCGTACCGT ACTCCGCCCC
GAGCTGATGC TGTTTGGCGA ATGGTGTGCC GCTCGCCACT CACTGGACTA CGACGCGCTG
CCCGACTGGT TCTTGCTGTT CGATGTATAT GACCGCAGCA TTGGACGTTT CTGGAGCACT
TCCCGGCGCA ACGCGCTGGC CGCAGAGGCC GGGCTGTCCA CGGTGCCGCT GGTATCGAGT
GGCCTCACCA CCCTGGCAGC GCTGAAGCAG TTGCTAGTGG ATACGCCTAG CCGCTATCGC
GCCGGGCTGC CGCTGGAAGG CGTGGTGGTG CGGCGCGAAT CGGGCGAGTG GTGCGAAGCA
CGTGCCAAGC TGGTGCGACC CGATTTCACC CAGGCCATCG ACACCCATTG GCGCAAGCGC
ACCATCGACT GGAACCGGGT GGATTGGACT CGCGTAGAGA CGCATTGA
|
|---|
| Protein sequence | MGKDFFRFPT TSHLAWLAKD GMPRDDKVLS PAETQELLSG DVVVEEKLDG ANLGLSLSPD
GALRAQNRGQ YLSAPHAGQF ARFPAWLTQH ESGLRTVLRP ELMLFGEWCA ARHSLDYDAL
PDWFLLFDVY DRSIGRFWST SRRNALAAEA GLSTVPLVSS GLTTLAALKQ LLVDTPSRYR
AGLPLEGVVV RRESGEWCEA RAKLVRPDFT QAIDTHWRKR TIDWNRVDWT RVETH
|
|---|
| |