| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0734 |
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| Symbol | |
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| ID | 4673838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 772113 |
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| End bp | 774203 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639837857 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_985054 |
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| Protein GI | 121593158 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0375525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCAAG AGAAGCTTCG TTTACACGCG TACTGGCGGA TGTTGGGAGC CGCAGTTGTG
GCTGCGCTGA CGGTGTCTGT GGCGCAAGCT CGCGGATCTA TTGATTCCAT CTCTGTTTTT
TTGCAAGGTG GTGCCGAAGT TCTGCGGATT GAATTTTCTG AGCCGCAAGC AGAATTGCCC
ACTGGGTTTT CTATCCAAAA CCCTGCGCGC ATTGCACTGG ACTTTCCTGG AGTGAGCAAT
GGGACCGGGC GCTCATCAAT AGATATCAAT CAGGGGAATA TCAAGTCTGC CAACATTGTG
CAAGCAGGAG CGCGGGCACG TGTAGTTTTG AATCTCAAGC AGCCCACTTC TTACCGCGCA
GAGTTGCAAG GCAAGACAGT CCTGGTGCTG TTGGATGCTG CGTCCTCGGC TGTAAAGATG
CCTCCTCCTC AGGTGACGAC ATTCGCAGAA AGTCAAAATA TTGACAATTT GCCGCTGAAG
GATCTTGATT TTCGACGTGG AGCAGATGGG GCCGGTCGTA TTGTTGTTGG GTTGCCTAAC
AATCAGGTGG GCGTCGATTT GCAGCAGCAG GGTAAGGGGC TGATTGTTGA TTTCCTGCGT
TCATCATTGC CCGAAGGCCT GCGCCGCAAA TTGGACGTTT CTGACTTCGG TACACCCGTG
CAAACCATTA CTGCATCACA ACAGGGTGAG CGTGTGCGTC TGACAATTGA CCCTGTTGGT
GAATGGGAGC ATAGCGCTTA TCAAAGTGAT AATCAGTTTG TAGTCGAGGT GCGGCCGAAG
AAGGTTGATT TGACTAAATT GACACAAGGT CCTGCATATT CTGGAGAGAA ACTCTCTCTG
AATTTTCAAA ATATTGAAGT TCGTTCGTTG CTGCAAGTGA TTGCGGATTT TACTAATTTC
AATATTGTCA CATCGGACAC TGTTACTGGT GCTTTGACCT TGCGGCTGAA GGATGTTCCC
TGGGATCAGG CTCTCCAGAT CATCATGGAC GCAAAGGGGC TTGGTATGCG CAAGTCTGGC
ACGGTACTGT GGATCGCGCC CAAAGACGAA ATAGACGAGC GCACGAAGAA GGATTACGAA
GCCGCTTTAG CGATTCAGAA ACTGGAGCCT TTGCGAACCC AGGCTTTCCA ATTGAATTAT
GCAAAAGCCG CCGACATGGT CACCCAACTG ACCATGAGCA GTCAGGGTGG ATCGTCCACG
AGCGGTTACT CCAATCGATT CCTGTCGGAT CGCGGGAGTG CAATCTCGGA GCCGCGCACC
AATCAGCTAT TTGTTACGGA TACTTCGGCC AAACTTGAAG AAGTTCGCCA GTTGTTGGCG
ACGCTTGATG TACCGGTGCG GCAGGTGATG ATCGAGGCGC GTATCGTGGA AGCGCGGGAT
ACGTTTGGTC GTTCCTTGGG GGTGCGACTG GGAGGAGGGT CGCGCACGGG CGGAAGTGCA
GTTGGCGGTA CCTACGATAA TGTGGCCGGC CCCACCGGGG GGAGTGGCAT GTCACCGTTC
GTTAGCCTGC CTGCATCTTT ATCAGGGGTC TCCACTGTTG GATCATTCGC ATTGTCGATC
TTCAATTCCA ACGCCAGTCG CTTCCTCTCT CTGGAGTTAT CTGCGATGGA AGCGGATGGA
CAGGGCAAGA TCGTTTCCAG TCCGCGTTTA ATTACGGCTG ATCAGACCAA GGCGCTTATC
GAACAGGGGA CGGAATATCC TTATTCGGTT ACCGCTCCGA ACGGTGCGAC AACCATCGCC
TTCAAGAAAG CCGTATTGAA ACTGGAAGTG ACGCCTCAGA TCACCCCTGA GGGCAACATC
ATTCTTGATC TGGACGTCAA CAAGGACAGT CGAGGAGAGA CCACCACGCA GGGGGTGGCC
ATCGATACTA AGCACGTCAA GACCCAAGTG TTGATCGAGA ACGGCGGCAC CGTCGTGATC
GGGGGTATTT TTGAGATGGA AGAGACCAAC CAAGAGAACA AAATACCTGT CTTGGGTGAC
GTTCCCGTGG TCGGGAATCT ATTCAAAAAT AGAACGAAGG AGTCCACCAA GCGGGAGATG
CTGGTGTTTA TTACTCCGAA GGTCATCACA GATCGCGGGC CGGTACGCTG A
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| Protein sequence | MIQEKLRLHA YWRMLGAAVV AALTVSVAQA RGSIDSISVF LQGGAEVLRI EFSEPQAELP
TGFSIQNPAR IALDFPGVSN GTGRSSIDIN QGNIKSANIV QAGARARVVL NLKQPTSYRA
ELQGKTVLVL LDAASSAVKM PPPQVTTFAE SQNIDNLPLK DLDFRRGADG AGRIVVGLPN
NQVGVDLQQQ GKGLIVDFLR SSLPEGLRRK LDVSDFGTPV QTITASQQGE RVRLTIDPVG
EWEHSAYQSD NQFVVEVRPK KVDLTKLTQG PAYSGEKLSL NFQNIEVRSL LQVIADFTNF
NIVTSDTVTG ALTLRLKDVP WDQALQIIMD AKGLGMRKSG TVLWIAPKDE IDERTKKDYE
AALAIQKLEP LRTQAFQLNY AKAADMVTQL TMSSQGGSST SGYSNRFLSD RGSAISEPRT
NQLFVTDTSA KLEEVRQLLA TLDVPVRQVM IEARIVEARD TFGRSLGVRL GGGSRTGGSA
VGGTYDNVAG PTGGSGMSPF VSLPASLSGV STVGSFALSI FNSNASRFLS LELSAMEADG
QGKIVSSPRL ITADQTKALI EQGTEYPYSV TAPNGATTIA FKKAVLKLEV TPQITPEGNI
ILDLDVNKDS RGETTTQGVA IDTKHVKTQV LIENGGTVVI GGIFEMEETN QENKIPVLGD
VPVVGNLFKN RTKESTKREM LVFITPKVIT DRGPVR
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