| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0474 |
|---|
| Symbol | |
|---|
| ID | 4672141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 488791 |
|---|
| End bp | 489873 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639837604 |
|---|
| Product | RNA-binding S4 domain-containing protein |
|---|
| Protein accession | YP_984801 |
|---|
| Protein GI | 121592905 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.15939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGGG GCGCGGCGCG CTCCACGGCG CGAGACAATA GCGCCATGCC CGAAACGCCC
GCACGCCCCC CCGCACCGTC CGTCCCCGCA CCGTCCGCTT CTGCTTCGCC CAGTCCGCTG
CGCCCGCGGC TGGTGCTGCG CAAGCCGACC GCGCCCGCAG CACCTGTGGC TACCGGCAAG
GCGCCGGGCC GGTCCGCAGG CCGGACGGCC GGCACGGCCG CACCCAGCGG CGCGGCAGGC
GCCCCCCGTA CGGCGAGCCG GCACGCGCCG GCCACGCCGC GCCCTCCTGC CACCCGTGCG
CCCGCTGGCG CTGCGCAGGC GCCTGCAGAC GGCCGCATGC GCCTGAACAA GCGCATGGCC
GATCTGGGCC TGTGCTCGCG CCGCGAGGCC GACGACTGGA TCGCCCAGGG CTGGGTGCGC
GTCAACGGGC AGGTGGCGGC CATGGGGCTG CAGGTGGGGC CGCACGACCG CATCGACGTG
GACCGCGCGG CCCAGGGCCA CCAGCGCCAG CAGGTGACCA TCCTGCTGCA CAAGCCCATG
GGCTATGTGA GCGGCCAGGC CGAGGACGGC CACACGCCGG CCGTGGCGCT GATCAACCCA
CGTACGCACT GGAAGGACGA TGAGAGCCGC ACGCGCTTTT CGCCCGCGCA ACTCAAGGGC
CTGGCACCCT GCGGGCGGCT GGACATCGAC TCCGTGGGCC TGCTGGTGCT GACGCAGGAC
GGCCGCGTGG CGCGCCAGCT CATCGGCGAG GACTCAACGG TGGACAAGGA GTACCTGGTG
CGCGTGCAGT ACGGCGATCG CGCGCAGGAT GTGCGCGCCG TCTTCCCCGC TGACAAGCTG
GCGCTGCTGA ACCATGGCCT GGCGCTGGAC GGCCAGCAGC TCAAGCCGGC GGTGGTGGAG
TGGCAGAACC CCGAGCAGTT GCGCTTCGTG CTGCGCGAGG GCAAAAAGCG CCAGATCCGC
CGCATGTGCG AGCTGGTGGG CCTCAAGGTG GTGGGCCTCA AGCGCATCCG CATCGGCCAG
GTGCTGCTGG GCAAGTTGCC GCCGGGCCAG TGGCGCTACC TGGCGCCGGG TGAGCGCTTT
TAA
|
|---|
| Protein sequence | MGRGAARSTA RDNSAMPETP ARPPAPSVPA PSASASPSPL RPRLVLRKPT APAAPVATGK
APGRSAGRTA GTAAPSGAAG APRTASRHAP ATPRPPATRA PAGAAQAPAD GRMRLNKRMA
DLGLCSRREA DDWIAQGWVR VNGQVAAMGL QVGPHDRIDV DRAAQGHQRQ QVTILLHKPM
GYVSGQAEDG HTPAVALINP RTHWKDDESR TRFSPAQLKG LAPCGRLDID SVGLLVLTQD
GRVARQLIGE DSTVDKEYLV RVQYGDRAQD VRAVFPADKL ALLNHGLALD GQQLKPAVVE
WQNPEQLRFV LREGKKRQIR RMCELVGLKV VGLKRIRIGQ VLLGKLPPGQ WRYLAPGERF
|
|---|
| |