| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3942 |
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| Symbol | |
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| ID | 4688624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 4208075 |
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| End bp | 4209595 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639836960 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_984159 |
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| Protein GI | 121606830 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00471657 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCACCT GGGGGGTGGC CGCGTTCCTG CTCCTCCCCT GGCTCAACCC CTACACTGCA
GGCCCCACGC CCAACGTCTG GCCCCTGCTG CTTTCGACCC TGTGCGCGGT ATTCCTGTGG
ACTTTCCGGA ACCGGCTCAA TGCGAGGCTG GTCACCGCTG GCTGGCTGAT CGCCGCAGCG
ATCAGCGCGC TCATCGGCCT GGTGCAGTAC TTTGGCCTGG CATCGGCTTT GAGTCCGTTG
ATCAGCCAGA CGGAGGCCGG CGAGGCGTTT GCCAACTTGC GCCAGCGCAA CCAGTTCGCC
ACGCTGACGA GCATCGGTTT GCTCGTCCTG ATCGGCTGGC TGGCGCAACG GGACAAGCCT
GGAGGCCCGC AACCGGCTCA GCAATGGCTG ATGCCCTGGT GGGCCTGGCT GCTGGCCCTG
CTGCTGGCGC TGGGCAATGC CGTCAGCAGT TCGCGCACCG GCCTGCTGCA ATGGCTGCTG
ATTGCCGCGC TCACCGCCTG GTGGGCGCTG CCGGACCGCT GGTGGCGGCT GCCGGTGTTC
GCCGTGCTGG CCTTGCTGGC CTATGGCGTC GCCGTGCTGA TGCTGCCGTG GCTGCTGGAA
CTGGCGACCG GATTGCACAG CGATGGCCTG TTTGGCCGGC TGGTCAAATC GCCGGGCTGC
TCCAGCCGCA AGATATTGTG GTCCAACGTG CTGACGCTGA TTGCCCAAAA GCCGTGGCTG
GGCTGGGGCT GGGGCGAACT GGACTATGCC CACTTCATCA CGCTGTACCC AGGGCCGCGC
TTTTGCGAAA TCCTCGACAA CGCGCACAAC CTGCCGCTGC ACCTGGCAGT GGAACTGGGC
GTTCCGGCCG CCGTGGCGAT TTGCGGCGCC CTGGGCTGGC TGGTGTGGCG CGCCCAGCCG
TGGCGCGAAC GCAATCCGGT GCGGCAGACG GCCTGGGGCG TGCTGGCGGT CATCGGCCTG
CACAGCCTGC TGGAATATCC GCTGTGGTAC GGGCCGTTCC AGATCGCCGC CGGGCTGAGT
GCCTGGCTGC TGTTGTCAGG CGGGCGCGAA AACCAGCCAT TGCCTGATGC CGATGTTGAC
GGTCTAAATG AAAAATTCAA GCAAAAAAAG CCTTTTGCGC AATACCTGCG GGCGCTGGCA
GCTATCACTA TGATAGTAAT GTTGGCGTGC GTGGCCATCA GCTATCACCG CGTCAGCCAG
ATTTACCTGT TGCCCGACAA GCGCAGCGCC GCCTACCGCG AAGACACGCT GGACAAGGTG
CGCGGCAGCC GGCTGTTCCG CAATCAGGCG CGCTTTGCGG AGTTAAGCAT GACGCCGCTC
ACGCCTGCCA ATGCCGCCGC CGTGTACGGC CTGGCCAAGG ATATGCTGCA CTACTCGCCC
GAGCCGCGCG TGATTGAAAA GGTGATTGAA AGCGCGGTGA TGCTGGGGCG CGATGACGAA
GCCCTGCAGT ATCTGGCGCG CTACCGGGCG GCTTTTCCGC AAGACCATGC GCGCTGGGCC
AGCAAGAACG CGGGCCGGTA A
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| Protein sequence | MPTWGVAAFL LLPWLNPYTA GPTPNVWPLL LSTLCAVFLW TFRNRLNARL VTAGWLIAAA
ISALIGLVQY FGLASALSPL ISQTEAGEAF ANLRQRNQFA TLTSIGLLVL IGWLAQRDKP
GGPQPAQQWL MPWWAWLLAL LLALGNAVSS SRTGLLQWLL IAALTAWWAL PDRWWRLPVF
AVLALLAYGV AVLMLPWLLE LATGLHSDGL FGRLVKSPGC SSRKILWSNV LTLIAQKPWL
GWGWGELDYA HFITLYPGPR FCEILDNAHN LPLHLAVELG VPAAVAICGA LGWLVWRAQP
WRERNPVRQT AWGVLAVIGL HSLLEYPLWY GPFQIAAGLS AWLLLSGGRE NQPLPDADVD
GLNEKFKQKK PFAQYLRALA AITMIVMLAC VAISYHRVSQ IYLLPDKRSA AYREDTLDKV
RGSRLFRNQA RFAELSMTPL TPANAAAVYG LAKDMLHYSP EPRVIEKVIE SAVMLGRDDE
ALQYLARYRA AFPQDHARWA SKNAGR
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