Gene Pnap_3895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3895 
Symbol 
ID4689716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4152652 
End bp4154748 
Gene Length2097 bp 
Protein Length698 aa 
Translation table11 
GC content66% 
IMG OID639836913 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_984112 
Protein GI121606783 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.249518 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTGA AGTTTCCCCG GCTGGCCCGT TGGGCCAGCC AGCGCATTTC CCTGTGGCTT 
GTGCTGCTGG CGCTGCTGGT GGCCCTGCTG GGGCTGCTGA TCTGGCTGGC CGGGCGCTAC
GAAGCGAGCG TGCTGCAAAG CCGGCTTGAA GACAATGCGG CGCAAGCCGT GACCGATATC
CGCTCCGGCC TGAACCGCAA CCTTCAGGCT TTTCAGGCCC TGCATGCCCG CGAGCGCGGC
CTTGACGCCT GGCAGGCGCC GGCAGGCCAG TTGCTGCATG AGCACAGCGA AATCCTGCGG
CTGGAGTGGC GCAACGAAAC GCTCGGCATG CTTGGCTTTG TCGAGACACC GTTTCGCAAG
CCGGTGTTTG AAAAGCTGGA CCGCCCCAGC CTGCAGGCCG ACGTGAGCCT GACCTGCACC
TCTGCCCGCC GCCTGAGCGG CCCGGCTTAT TCGCTCAGCT ATTTTCTGCC GCAATCCGAC
GGGCTGGGCA TGGAAGTGAT CGACATGTGC CTGCCCCTCA TGGAGTCGGG CCGCCTGACG
GGCTATGTCG TGGCCACCTA TTCGCTGCAA AACCTGCTGG CCGAAGTGGT CAGCAAGCCT
TTGTCACAAG GCGTCGGGCT GTCCCTGACC GAGGCCGACG GCACGCGCCT GGCGATGTAC
GGGGTGCCGG CACGCGGAAG CCGTGCGTTC GTGGCCCGGC AGCTGCTCGA CTTGCCGGGC
AGCACGATGG TGGTCCGGAT GGAAAGCCGG CGCGGCACCC CGGCCCTGTT TCCCAACGTC
CTGACGGCGC TGGTGACCGC TATGTCGCTG GTGCTGCTGG TCGTGCTGTT CCTGCTGGGA
CGCGACATGC GGCGGCGCCT GCAGGTCGAG CACGACCTGG GCGAGGCGCT GGCCTTTCGC
AAGGCGATGG AAAACTCGCT GCTGACCGGC CTGCGCGCCC GCGACCTGCA GGGCCGCATC
ACCTACGTCA ATCCGGCTTT TTGCAAGATG GTGGGGGTCG ATGCCCAGGA GTTGCTCAAC
CAGAGCATGC CTTCGCCGTA CTGGCCGCCC GAACTGGCGA ACGCCTACCA GCGGCGCCAG
GAAATGCGCC TGGCCGGCAA TCAGCTGCCC CGGGAGGGCC ATGAATCGGT CTTCATGCGC
AAGGACGGCA CGCGCTTTCC GGTGCTCATC ATGGAGGCGC CGCTGATCAA TGCGGTGGGC
AAGCACACCG GCTGGATGAG CACCATCCTG GACGTCAGCG AGCAGCGCCG CACCGAGGAA
CTCTCGCGCG CCAGCCAGGA CCGCCTGCAG GCCAGCGCCC GGCTGGCCAT GGTCGGCGAG
ATGGCTTCGC TGCTCAGCCA CGAGCTGAAC CAGCCGCTGG CGGCGATTTC AAGCTACGCC
ACCGGCTCGC TCAATCTGTT GCAGGACGAA GCCCGGGGGG ATCGCGCGCC GGATTCAGTC
GCCCTGTTCG ATGACCTGCA GCTGGCCATG GGCCGCATTG CCGAGCAGGC CGAGCGGGCC
GGCAGGGTCA TCAAGAGCGT GCATGACTTC GTGCGCAGGA GCGAAAGGGT GCGCGAAGCG
GTCCCGCCGC GCGCGCTGCT GGACGCCATC ATGCCGCTGG TGAGCCTGCA GGCGCGCAAG
CTTGGCGTGC AGGTGGCTAC CGTGGTCGAT GACACCTGCC CGCCCGTGCT GTGCGACCGC
ACCATGGTCG AGCAGGTACT GCTCAACCTG GCGCGCAACG GCATGCAGGC TATGCGGGGC
TGCAACGATG CGCAAACCGC AGCGCCAGCC TCGTTGCAGC CCGACAAGGT GCTGACATTG
CGCATTCGCC CGGCCGCCTC CAATGCGCAA AGCCAGTGGG TTGAATTTGC GGTGATCGAC
CAGGGCGAAG GCATTTCCGG CGAAGTGGCC AGGCAACTGT TCACCCCCTT CTTCACCACC
CGCAAAGAGG GCATGGGACT GGGCCTGAGC CTGTGCCGCA CGGTGATCGA GCAGCACGGC
GGTTTCCTCG GCTATGAAAG CGTCCAGCCG CAAGGTACCA TTTTCAGTTT TACCCTGCCG
GTGGCCGCCA TGCCCGGGGC CGGGGAAGAC GCGCATCACC CGCTTGAAGA AAGTTGA
 
Protein sequence
MSLKFPRLAR WASQRISLWL VLLALLVALL GLLIWLAGRY EASVLQSRLE DNAAQAVTDI 
RSGLNRNLQA FQALHARERG LDAWQAPAGQ LLHEHSEILR LEWRNETLGM LGFVETPFRK
PVFEKLDRPS LQADVSLTCT SARRLSGPAY SLSYFLPQSD GLGMEVIDMC LPLMESGRLT
GYVVATYSLQ NLLAEVVSKP LSQGVGLSLT EADGTRLAMY GVPARGSRAF VARQLLDLPG
STMVVRMESR RGTPALFPNV LTALVTAMSL VLLVVLFLLG RDMRRRLQVE HDLGEALAFR
KAMENSLLTG LRARDLQGRI TYVNPAFCKM VGVDAQELLN QSMPSPYWPP ELANAYQRRQ
EMRLAGNQLP REGHESVFMR KDGTRFPVLI MEAPLINAVG KHTGWMSTIL DVSEQRRTEE
LSRASQDRLQ ASARLAMVGE MASLLSHELN QPLAAISSYA TGSLNLLQDE ARGDRAPDSV
ALFDDLQLAM GRIAEQAERA GRVIKSVHDF VRRSERVREA VPPRALLDAI MPLVSLQARK
LGVQVATVVD DTCPPVLCDR TMVEQVLLNL ARNGMQAMRG CNDAQTAAPA SLQPDKVLTL
RIRPAASNAQ SQWVEFAVID QGEGISGEVA RQLFTPFFTT RKEGMGLGLS LCRTVIEQHG
GFLGYESVQP QGTIFSFTLP VAAMPGAGED AHHPLEES