Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3895 |
Symbol | |
ID | 4689716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 4152652 |
End bp | 4154748 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639836913 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_984112 |
Protein GI | 121606783 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.249518 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGA AGTTTCCCCG GCTGGCCCGT TGGGCCAGCC AGCGCATTTC CCTGTGGCTT GTGCTGCTGG CGCTGCTGGT GGCCCTGCTG GGGCTGCTGA TCTGGCTGGC CGGGCGCTAC GAAGCGAGCG TGCTGCAAAG CCGGCTTGAA GACAATGCGG CGCAAGCCGT GACCGATATC CGCTCCGGCC TGAACCGCAA CCTTCAGGCT TTTCAGGCCC TGCATGCCCG CGAGCGCGGC CTTGACGCCT GGCAGGCGCC GGCAGGCCAG TTGCTGCATG AGCACAGCGA AATCCTGCGG CTGGAGTGGC GCAACGAAAC GCTCGGCATG CTTGGCTTTG TCGAGACACC GTTTCGCAAG CCGGTGTTTG AAAAGCTGGA CCGCCCCAGC CTGCAGGCCG ACGTGAGCCT GACCTGCACC TCTGCCCGCC GCCTGAGCGG CCCGGCTTAT TCGCTCAGCT ATTTTCTGCC GCAATCCGAC GGGCTGGGCA TGGAAGTGAT CGACATGTGC CTGCCCCTCA TGGAGTCGGG CCGCCTGACG GGCTATGTCG TGGCCACCTA TTCGCTGCAA AACCTGCTGG CCGAAGTGGT CAGCAAGCCT TTGTCACAAG GCGTCGGGCT GTCCCTGACC GAGGCCGACG GCACGCGCCT GGCGATGTAC GGGGTGCCGG CACGCGGAAG CCGTGCGTTC GTGGCCCGGC AGCTGCTCGA CTTGCCGGGC AGCACGATGG TGGTCCGGAT GGAAAGCCGG CGCGGCACCC CGGCCCTGTT TCCCAACGTC CTGACGGCGC TGGTGACCGC TATGTCGCTG GTGCTGCTGG TCGTGCTGTT CCTGCTGGGA CGCGACATGC GGCGGCGCCT GCAGGTCGAG CACGACCTGG GCGAGGCGCT GGCCTTTCGC AAGGCGATGG AAAACTCGCT GCTGACCGGC CTGCGCGCCC GCGACCTGCA GGGCCGCATC ACCTACGTCA ATCCGGCTTT TTGCAAGATG GTGGGGGTCG ATGCCCAGGA GTTGCTCAAC CAGAGCATGC CTTCGCCGTA CTGGCCGCCC GAACTGGCGA ACGCCTACCA GCGGCGCCAG GAAATGCGCC TGGCCGGCAA TCAGCTGCCC CGGGAGGGCC ATGAATCGGT CTTCATGCGC AAGGACGGCA CGCGCTTTCC GGTGCTCATC ATGGAGGCGC CGCTGATCAA TGCGGTGGGC AAGCACACCG GCTGGATGAG CACCATCCTG GACGTCAGCG AGCAGCGCCG CACCGAGGAA CTCTCGCGCG CCAGCCAGGA CCGCCTGCAG GCCAGCGCCC GGCTGGCCAT GGTCGGCGAG ATGGCTTCGC TGCTCAGCCA CGAGCTGAAC CAGCCGCTGG CGGCGATTTC AAGCTACGCC ACCGGCTCGC TCAATCTGTT GCAGGACGAA GCCCGGGGGG ATCGCGCGCC GGATTCAGTC GCCCTGTTCG ATGACCTGCA GCTGGCCATG GGCCGCATTG CCGAGCAGGC CGAGCGGGCC GGCAGGGTCA TCAAGAGCGT GCATGACTTC GTGCGCAGGA GCGAAAGGGT GCGCGAAGCG GTCCCGCCGC GCGCGCTGCT GGACGCCATC ATGCCGCTGG TGAGCCTGCA GGCGCGCAAG CTTGGCGTGC AGGTGGCTAC CGTGGTCGAT GACACCTGCC CGCCCGTGCT GTGCGACCGC ACCATGGTCG AGCAGGTACT GCTCAACCTG GCGCGCAACG GCATGCAGGC TATGCGGGGC TGCAACGATG CGCAAACCGC AGCGCCAGCC TCGTTGCAGC CCGACAAGGT GCTGACATTG CGCATTCGCC CGGCCGCCTC CAATGCGCAA AGCCAGTGGG TTGAATTTGC GGTGATCGAC CAGGGCGAAG GCATTTCCGG CGAAGTGGCC AGGCAACTGT TCACCCCCTT CTTCACCACC CGCAAAGAGG GCATGGGACT GGGCCTGAGC CTGTGCCGCA CGGTGATCGA GCAGCACGGC GGTTTCCTCG GCTATGAAAG CGTCCAGCCG CAAGGTACCA TTTTCAGTTT TACCCTGCCG GTGGCCGCCA TGCCCGGGGC CGGGGAAGAC GCGCATCACC CGCTTGAAGA AAGTTGA
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Protein sequence | MSLKFPRLAR WASQRISLWL VLLALLVALL GLLIWLAGRY EASVLQSRLE DNAAQAVTDI RSGLNRNLQA FQALHARERG LDAWQAPAGQ LLHEHSEILR LEWRNETLGM LGFVETPFRK PVFEKLDRPS LQADVSLTCT SARRLSGPAY SLSYFLPQSD GLGMEVIDMC LPLMESGRLT GYVVATYSLQ NLLAEVVSKP LSQGVGLSLT EADGTRLAMY GVPARGSRAF VARQLLDLPG STMVVRMESR RGTPALFPNV LTALVTAMSL VLLVVLFLLG RDMRRRLQVE HDLGEALAFR KAMENSLLTG LRARDLQGRI TYVNPAFCKM VGVDAQELLN QSMPSPYWPP ELANAYQRRQ EMRLAGNQLP REGHESVFMR KDGTRFPVLI MEAPLINAVG KHTGWMSTIL DVSEQRRTEE LSRASQDRLQ ASARLAMVGE MASLLSHELN QPLAAISSYA TGSLNLLQDE ARGDRAPDSV ALFDDLQLAM GRIAEQAERA GRVIKSVHDF VRRSERVREA VPPRALLDAI MPLVSLQARK LGVQVATVVD DTCPPVLCDR TMVEQVLLNL ARNGMQAMRG CNDAQTAAPA SLQPDKVLTL RIRPAASNAQ SQWVEFAVID QGEGISGEVA RQLFTPFFTT RKEGMGLGLS LCRTVIEQHG GFLGYESVQP QGTIFSFTLP VAAMPGAGED AHHPLEES
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