| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3888 |
|---|
| Symbol | |
|---|
| ID | 4689556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 4146128 |
|---|
| End bp | 4146694 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639836906 |
|---|
| Product | AsnC family transcriptional regulator |
|---|
| Protein accession | YP_984105 |
|---|
| Protein GI | 121606776 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1522] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.330604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.484921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTGC TTTTTTTGCC TGATTTAGGC TGTCTGGCGA AAGATTCTTG CTGCAAAATA
CGAAAAATGG AAACATTGGA CAAGTTTGAC ATCGCCATCC TGAACGAGTT GCAACGCGAG
GCGCGACTCA CCAACACCGA ACTGGCGTCG CGCGTGGGTT TGTCGGCCGC GCCCTGCTGG
CGGCGCGTGC GGGCGCTGGA GGAAGCCGGC TTCATCACCG GCTACCGGGC CGAGATCAAC
CGCCACAAGA TCGGCCTGGG CGTGCTGGCC TTCGTGCGGC TAGACGCCGC CCGCAACACC
GGCGACGTGC TGCAGACGCT CGAAGAAGCG ATCCGCAAGA TTCCCGAGGT CGTCAGCTGC
CACTACATCA GCGGCACCGG GACTTTCGAG TTGCAGGTGG TCAGCCGCGA CCTCAACACC
TTCAGCCAGT TCGCCCGCGA CGTGCTGATC AACCTGCCCA ACGTGAAGGA CTTGCACACC
AGCTTTTCGC TCGGCGAGGT GAAAGCCAGT GGCGCGCTGC CGCTCGGGCA TTTGATGGCT
TCCCCAACCG GAAATTCAAG CAAATAG
|
|---|
| Protein sequence | MSLLFLPDLG CLAKDSCCKI RKMETLDKFD IAILNELQRE ARLTNTELAS RVGLSAAPCW
RRVRALEEAG FITGYRAEIN RHKIGLGVLA FVRLDAARNT GDVLQTLEEA IRKIPEVVSC
HYISGTGTFE LQVVSRDLNT FSQFARDVLI NLPNVKDLHT SFSLGEVKAS GALPLGHLMA
SPTGNSSK
|
|---|
| |