| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3612 |
|---|
| Symbol | |
|---|
| ID | 4689762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3842920 |
|---|
| End bp | 3843729 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639836625 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_983829 |
|---|
| Protein GI | 121606500 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.513749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCCC AAAAAATCGT TCTCAACGTC AACGGCATCG AGGTCATCTA CAACCATGTG
ATTCTCGTGC TCAAGGGCGT TTCGCTGCAA GTGCCCGAAG GCAAGATCGT AGCCATCCTG
GGGGGCAACG GCGCGGGCAA GACCACGACG CTGCGCGCCA TCTCCAACCT GCTGCAGGGC
GAGCGCGGCG CGGTCACCAA GGGCTCGATA GAGCTGCGCG GCGAGCGCAT CGAGAACCTG
TCGCCGGCCG ACCTGGTGCA GCGCGGCGTG GTGCAGGTCA TGGAAGGGCG GCACTGCTTT
GCCCACCTGA CCATCGAGGA AAACCTGATG ACCGGCGCCT ACACGCGCAC CAGCAAGGCC
GAGATCGCCG CCAACCTCGA AAAGGTCTAT AACTACTTTC CGCGCCTGAA GACGCGCCGC
GCCTCGCAGG CCGCCTACAC CTCGGGCGGC GAGCAGCAGA TGTGCGCGAT TGGCCGCGCC
ATCATGACCA ACCCCAGCAT GGTGCTGCTC GACGAGCCGT CGATGGGCCT GGCGCCGCAG
ATCGTCGAGG AGGTGTTCAA CATCGTCAAA GACCTGAACA CCAAGGAAAA AGTCACCTTC
CTGCTGGCCG AGCAGAACAC CAACATGGCG CTGAAATACT CCGACTACGG CTACATCATG
GAGTCGGGCC GCGTGGTGAT GGACGGCATT GCCAGCGACC TGGCCAACAA CGAGGACGTG
AAGGAGTTCT ACCTCGGCGT TGGCGGCGGT GAACGCAAAA GCTTCAAGGA CGTGAAAAGC
TACAAGCGCC GCAAACGCTG GCTGGCCTGA
|
|---|
| Protein sequence | MEPQKIVLNV NGIEVIYNHV ILVLKGVSLQ VPEGKIVAIL GGNGAGKTTT LRAISNLLQG
ERGAVTKGSI ELRGERIENL SPADLVQRGV VQVMEGRHCF AHLTIEENLM TGAYTRTSKA
EIAANLEKVY NYFPRLKTRR ASQAAYTSGG EQQMCAIGRA IMTNPSMVLL DEPSMGLAPQ
IVEEVFNIVK DLNTKEKVTF LLAEQNTNMA LKYSDYGYIM ESGRVVMDGI ASDLANNEDV
KEFYLGVGGG ERKSFKDVKS YKRRKRWLA
|
|---|
| |