| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3259 |
|---|
| Symbol | |
|---|
| ID | 4690080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3461143 |
|---|
| End bp | 3462267 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836272 |
|---|
| Product | TRAP-type uncharacterized transport system protein, periplasmic component |
|---|
| Protein accession | YP_983478 |
|---|
| Protein GI | 121606149 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.27469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGT CACCGAAAAA ATGGATGCGC GGCTTGAGCG TTCTGGCCGG CATCTGCGCC
GCCGCTGCCG CGCTGTCGGC CGGCGCCGAG AGCATCGTCA CCGGCGGCAA GACGGGCACC
TACTACGCCA TCGGCAGCAA TTTGCGCGAC TTCGTGAACC CGGCGCTGGA AGTCAAGGAC
TCCAAGGGCT CGTGGGCCAA CGTCGAGGAC ATGAGCCGCA CCAAGGGCGT GACGCTGGCC
ATCGTCCAGT CGGACGTGTA TTCGGCGTTC GTGCAGCTGC GCGATTCGAA GGAAGTTCCC
GAGGCCACGC GGCGCGAATA CGCGCAGCTG CTGGCCAATC TGCGCGTGTT CATGCCGCTG
TACAAGGAAG AAATCCACTT CCTGGCGCGC AAGGACGACC CGATTGAATT CATCCACCAG
ATCAAGGGCA AGCCTTTGTG GATGGACATG GAGAAAAGCG GAACCTACCT GACGGCGCTG
AACATCTACA GCAAGCTGTT CCAGGAGCGG CCCAATGCCG TCGAGCCCTT CATCAACACC
ACCGCCACGG GCGAGGACGA GGGCACCAAG CGGCGCCGCT CGGCCCTGAT GGCGCTGAGC
GATCCGGCTT ACTACAAGGC CTACCCGAAG ATTGATGTCA TGGTGCTGGT GGGCGGGCAG
CCGCTGGGCC TGCTGGAAAA AAACCTGCCG CCCAACCTCA AGCTGCTCAA ATTCGACCCG
GCGCAGCCCG GCGCGGCCAA GGTGCTGCAG GATTACCAGA AGGCGGCGAT TCAAAAGAGC
AGTTACCCGC TGCTCAATAT CGCGGGCAGC GAGTCGCCGT CGCTGGCGGT GGATTCCTAC
CTGATCACCG CCAATTTCGC GGACCCGCAG CGCAACCAGT ACATCAAGGA TTTCGCCGAC
CAGTTCTGCA CGAATTTCGG TGTGTTGCAG GAGCGCGGCC ATGCCAAATG GAAGTCGCTG
ACCTGGCAGC CGGGGTCAAG CTTGCCGCCG GTGGCCGCAG GCTGGCAGTA TTCCGATAAG
GTCAAGGAGC GGCTGGCCAG TTGCCGCACC AGCGCTGCGG CGGCTACGGC GGCCAAGCCC
AGCGCCTGCA GTCCACAAGA CCGCGTGACC GGGCTGTGCC GCTGA
|
|---|
| Protein sequence | MNQSPKKWMR GLSVLAGICA AAAALSAGAE SIVTGGKTGT YYAIGSNLRD FVNPALEVKD
SKGSWANVED MSRTKGVTLA IVQSDVYSAF VQLRDSKEVP EATRREYAQL LANLRVFMPL
YKEEIHFLAR KDDPIEFIHQ IKGKPLWMDM EKSGTYLTAL NIYSKLFQER PNAVEPFINT
TATGEDEGTK RRRSALMALS DPAYYKAYPK IDVMVLVGGQ PLGLLEKNLP PNLKLLKFDP
AQPGAAKVLQ DYQKAAIQKS SYPLLNIAGS ESPSLAVDSY LITANFADPQ RNQYIKDFAD
QFCTNFGVLQ ERGHAKWKSL TWQPGSSLPP VAAGWQYSDK VKERLASCRT SAAAATAAKP
SACSPQDRVT GLCR
|
|---|
| |