| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3239 |
|---|
| Symbol | |
|---|
| ID | 4687568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3440725 |
|---|
| End bp | 3442527 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639836252 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_983458 |
|---|
| Protein GI | 121606129 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0590846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG TCATGCCCCC CAAACCACCC CTGAATTCTC CCGCTCACAG GCGGCATGCC
GGCCCGCTGG ACTGGCGCAA GCTGGTCGAA TGGCTGGGGG AAGACGGCAT CATCAGCGCC
GTTGACGCGC AACGCACCAT TGCCCGCTGT GCGCAGGTGC AAAGCGCCCA GCACCCCATC
GTCAGGCTGG CGAGCATCGG CATGACGCGC GTGGCCGACG GCAAGCCGCT GGATGTGGAA
ACCATCAGCC AGTGGCTGGC CGGCTGCGCG GGCCTGCAGT ATTTGCGCAT CGACCCGCTC
AAGGTCGATG TGGGCAAGGT GGCCGATTCC ATGTCGGCCG TGTATGCCGA GCGCCACAAG
GTGCTGCCGG TGCAGGTCAC GGCGCACGAG CTGGTGATTG CCACGTCCGA CCCGTTCGTC
ACCGACTGGG TGCCCGAGGT CGAGCGCCAG TCCAAGCGCA GCGTGCGCCT GGTGGTGGCC
AATCCGCTGG AGATCAGCAA GTTCACGGCC GAGTTTTTCG CGCTCGCCAA ATCGGTCAAG
GCCGCGCTCA AGTCGAGCGG CGGCTCCAGC ACGGCCAGCT TCGAGCAGCT GGTGGAGCTG
AACAAGAGCA ACCGGCAGCT CGACGCCAAC GACCAGGGCG TGGTGCAGGT GGTGGACTGG
CTCTGGCAGT ACGCCTTTGA CCAGCGCGCC AGCGACATCC ACCTGGAGCC TAGGCGCGAG
CAGGGCGTGA TCCGCTTTCG CATCGACGGC ATCCTGCATC CGGTGTACCA GCTGCCCATG
GGCGTTCACA ACGCCATGAC GGCGCGCATC AAGCTGCTGG GGCGCATGGA CGTGGTGGAA
AAGCGCCGGC CGCAGGATGG CCGCATCAAG ACGCGCAACC CGCGCGGCGA CGAGGTGGAA
ATGCGCCTGT CCACGCTGCC CACGGCCTTT GGCGAAAAGA TGGTGATGCG CATTTTCGAC
CCCGACACCA CCGTCAAGAA CCTCGATGCG CTGGGGTTTT CACGGCACGA CGCCGAGCGC
TGGGAGCAGC TCGTCAAGCG CCCGCACGGC ATCGTGCTGG TGACCGGCCC GACCGGCTCG
GGCAAGACCA CCACGCTGTA TTCGACGCTG AAACGACTGG CGACCGAAGA GGTCAACATC
AACACGATTG AAGACCCGAT TGAGATGATC GAGCCGGCCT TCAACCAGAC GCAGGTCCAG
CCGATGCTGA ACTTCGGCTT TCCCGAAGGC CTGCGCTCCT TGATGCGGCA GGACCCGGAC
ATCATCATGG TGGGCGAAAT CCGCGATTTG CAGACCGCCG AAATGGCCGT GCAGGCCGCG
CTCACCGGCC ACCTGGTGTT CAGCACGCTG CACACCAACG ACGCGCCCTC GGCGGTCTCG
CGGCTGATGG AGCTGGGCGT GCCGAACTAC CTGATCAACG CGACCCTGCT CGGCGTGCTG
GCGCAGCGGC TGGTGCGCAC CCTGTGCGGC AGCTGCCGCC AGCCGGATGA AAACGCCAGG
CGCGAAACGC TGGCCGAGCT GGTCAAGCCC TGGCAGATCA CCGGCAGTTA CCGGCCTTAC
AAGCCGGTGG GCTGCGTCGA TTGCCGCATG ACCGGTTTTC GGGGACGGAT GGGGCTGTAT
GAATTGCTGA CGGTGACCGA AGCCTTCAAG GAGAAGGTTT CAAAAGAGCC CAACATGGAC
GCGCTGCGCC GCCAGGCCAT CAGCGAAGGC ATGCGTCCGC TGCGGCTGGC CGGAGCCTTG
AAAGTAGCTG AAGGCTTGAC CACGCTGGAA GAAATCCTGG CCACCACGCC GCCCTTGTCC
TGA
|
|---|
| Protein sequence | MSAVMPPKPP LNSPAHRRHA GPLDWRKLVE WLGEDGIISA VDAQRTIARC AQVQSAQHPI
VRLASIGMTR VADGKPLDVE TISQWLAGCA GLQYLRIDPL KVDVGKVADS MSAVYAERHK
VLPVQVTAHE LVIATSDPFV TDWVPEVERQ SKRSVRLVVA NPLEISKFTA EFFALAKSVK
AALKSSGGSS TASFEQLVEL NKSNRQLDAN DQGVVQVVDW LWQYAFDQRA SDIHLEPRRE
QGVIRFRIDG ILHPVYQLPM GVHNAMTARI KLLGRMDVVE KRRPQDGRIK TRNPRGDEVE
MRLSTLPTAF GEKMVMRIFD PDTTVKNLDA LGFSRHDAER WEQLVKRPHG IVLVTGPTGS
GKTTTLYSTL KRLATEEVNI NTIEDPIEMI EPAFNQTQVQ PMLNFGFPEG LRSLMRQDPD
IIMVGEIRDL QTAEMAVQAA LTGHLVFSTL HTNDAPSAVS RLMELGVPNY LINATLLGVL
AQRLVRTLCG SCRQPDENAR RETLAELVKP WQITGSYRPY KPVGCVDCRM TGFRGRMGLY
ELLTVTEAFK EKVSKEPNMD ALRRQAISEG MRPLRLAGAL KVAEGLTTLE EILATTPPLS
|
|---|
| |