| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3142 |
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| Symbol | |
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| ID | 4687123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3335287 |
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| End bp | 3337515 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639836154 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_983361 |
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| Protein GI | 121606032 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTCTCA AGCGATTGCG GCAAGACGCC GGTTTGCGGA TTTTTACTCT TTTATTGATA
GCTGCCTGCG CACAGCCAGC GTGCGCAAAC GGCACTTTTG ATCAAATAAA ACGCGATTTC
AGGCCGTCCG ACACGCTGGT GCTCGACCGC GACGGCGACA TCATCCAGCG CGTGCGCCTG
GACGCCAGCG TGCGGCGCGG CCAATGGGTG GCGCTGGCCG ACATCTCGCC GGCCCTGCGC
ACGGCGCTGG TGCTCAGCGA GGACAAGCGC TTTTACGAGC ACAGCGGCGT GGACTGGCGC
GCCGTGTCCA GCGCCGCCTG GGGCAATCTG TGGAACACCC GGACCCGGGG CGCGTCCACC
CTCAGCATGC AGCTGGCCGG CCTGCTCGAC GCCGACTTGC GGGCCGGCGC CCAAGGCCGC
AGCCTGGGCC AGAAAATCGG CCAGACGGTT TCCAGCCAGT GGCTCGAAGC GCGCTGGCGC
AAGGACCAGA TCCTGGAGGC TTACCTGAAC CTGGTGCCGT TTCGCGGCGA GCTGGTCGGC
ATTGACGCGC TCAGCCGCAC CCTGTTCGGC AAGGCGGCGC ACGGACTGGA CGAGCGCGAA
GCCGCCGTCG CCAGCGCGCT GGTGCGGGCG CCGAATGCCA AAGCCGCGCA GGTCGCTCAG
CGCGCCTGCG CGGTGATGAA ACTGATGCAG CCGGGCGTGA AGATCGACTG CGACGGGCTG
GACCTGTTCG CCACGGGCGC GCTGCAGCGC CGGGCATTCG AGGCCAGCGA AGGCATTGCG
CCGCATTTGG CGCGAAGGCT TTTGGCGCAG AAACCCGGCA ACCAGACGAT TCATTCCACC
CTGCGCGCCC CGCTCCAGCG CTTCGCCGTG CAGACGCTTG CTCAGCACCT GCGCGAGCTG
CGCGGCCGCC ACGTCGAGGA CGGCGCCGCC GTCGTGTTCG ACAACGCCAG CGGCGAGGTG
CTGGCCTGGG TCGGCTCCTC GGGCATGCTC AGCGCCGCCG CCGAGGTGGA CGGCGTGCTG
GCGCTGCGCC AGCCCGGCTC GACCCTCAAG CCTTTTTTGT ATGCGCAGGC GATTGCCGAG
CGGCGCATCA CCGCCGCCTC GCTGCTCGAA GACTCGTCGT CGCAAATCCA GACGGCCGGC
GGCCTGTACA TTCCGCAAAA CTACGACCGC CGGTTCAAGG GCCTGGTGTC CAGCCGCACC
GCGCTGGGCG CCTCGCTCAA CGTGCCGGCC GTGCGCACGC TCGTGATGGT CTCGCCCGAC
GCGTTTGCCC GGCAGCTGCG CGCGGTCGGC CTGCCGCTGA AGGAATCGGG CGACTACTAC
GGCTACAGCC TGGCGCTGGG CAGCGCCGAG GTCTCGCTGC TGTCGCTGAC GAACGCCTAC
CGCACGCTGG CCAACGGCGG GCGCTTCAGC GAGGTCCAGT TCGGGGTGGG GGCGGCTGTC
CGCTTCCTGC CCGCCCTGGA CCCGCGCGCC GCCTTCATCG TCAGCGACAT CCTGGCCGAC
CCGCTGGCGC GCGCCCGCAC CTTCGGCACC GACAGCATCC TGGCGACGCG TTTCTGGACG
GCGGTGAAAA CCGGCACCAG CAAGGACATG CGCGACAACT GGGCGCTGGG TTATTCCAGC
CGCTACACCG TCGGCGTGTG GGTCGGCAAC GCCAGCGGCG CGCCGATGTG GGACGTGAGC
GGCACCAGCG GCGCGGCGCC CGTCTGGGCG GCGCTGATGA AGCACCTGCA CCAGACCGAA
CCAAGCCGCG CGCCCACCCC GCCACCGGGC GTGGTGCAAA CCCGCGCGGA GTTTGGCAAC
CAGCTTGAAG CGGCGCGCAG CGAGTGGTTC ATCCGGGGCA CCGAGCAAGC CGTTTTTGCT
ATTGATTCAG GAGCTGAAAA CGCCCTCCCA TCAAGCGCAA AAGGCCTGAA AAGCATCAAA
AATTCAGCCG TCGAAGCCGC TGCGCCGCCG CGCATCACAG CCCCGGCTTC GGGCACCATC
ATTGCGCTGG ACCCGGACAT CCCACCGGCG CACCAGCGCC TGACGTTCAG CGCCGAAGGA
CACAGCCTGC GCTGGCTGAT GGACGGCAAG GTGTTCGCCA GGGGCGCCAC CGCGCAGTGG
TTGCCGTGGC CGGGGCGGCA TGTGGTGCGG ATTGTCGGGA AGCACGGGGA AGTGCTCGAT
GAAATTCGGC TGGAGGTGCG GGGAGCGGGA GTGAAGGCAG CGCAGGCCGG GCCGATGGGG
AAGCGCTGA
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| Protein sequence | MLLKRLRQDA GLRIFTLLLI AACAQPACAN GTFDQIKRDF RPSDTLVLDR DGDIIQRVRL
DASVRRGQWV ALADISPALR TALVLSEDKR FYEHSGVDWR AVSSAAWGNL WNTRTRGAST
LSMQLAGLLD ADLRAGAQGR SLGQKIGQTV SSQWLEARWR KDQILEAYLN LVPFRGELVG
IDALSRTLFG KAAHGLDERE AAVASALVRA PNAKAAQVAQ RACAVMKLMQ PGVKIDCDGL
DLFATGALQR RAFEASEGIA PHLARRLLAQ KPGNQTIHST LRAPLQRFAV QTLAQHLREL
RGRHVEDGAA VVFDNASGEV LAWVGSSGML SAAAEVDGVL ALRQPGSTLK PFLYAQAIAE
RRITAASLLE DSSSQIQTAG GLYIPQNYDR RFKGLVSSRT ALGASLNVPA VRTLVMVSPD
AFARQLRAVG LPLKESGDYY GYSLALGSAE VSLLSLTNAY RTLANGGRFS EVQFGVGAAV
RFLPALDPRA AFIVSDILAD PLARARTFGT DSILATRFWT AVKTGTSKDM RDNWALGYSS
RYTVGVWVGN ASGAPMWDVS GTSGAAPVWA ALMKHLHQTE PSRAPTPPPG VVQTRAEFGN
QLEAARSEWF IRGTEQAVFA IDSGAENALP SSAKGLKSIK NSAVEAAAPP RITAPASGTI
IALDPDIPPA HQRLTFSAEG HSLRWLMDGK VFARGATAQW LPWPGRHVVR IVGKHGEVLD
EIRLEVRGAG VKAAQAGPMG KR
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