| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2969 |
|---|
| Symbol | |
|---|
| ID | 4687487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3136676 |
|---|
| End bp | 3138241 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639835982 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_983189 |
|---|
| Protein GI | 121605860 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0473901 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCAGCAG GAATCGAGAA AAAGGCTTTG CAAAGCCGCC ATGCCGGGAA TTTCCCCAGC
CTGTTCACCG GCCTGATCGC CAGCCTGCTG ATGGCTGGCT GCATGACCCA GCCGGCCTAC
CGCACGCCCG AAGTGCGCAT GCCCGCCGCC TGGCATGCGC CCCAGCCGCA TGCCGGCAGC
CGCCAGCAGC TGGCCGACTG GTGGGCGCGC TTTGACGACC CGGTACTGAG CCGGCTGATT
CACACTGCCG AAGAGGGCAG CCCTTCGCTG GCGCAGGCGG CGGCGCGCAT TGCCGGCGCG
CGCGCCACGC TGGCTTCCAG CCAGGCCGGC GCCCTTCCTT CGGTGAGCGG CAGTGCGGCC
CTCAGCCGGG CACGCCAGGC GCAGGGCAGC GGGCAAGGCC AGGGGCAGCC GGGCAGCAGC
ACCCTCACCA GCCGCAGCGC CGGGCTGGAT GCCTCATGGG AAATCGACCT GTTCGGCAAG
CTGCGCAAGG GCAGCGAAGC CGCCGAGGCC CGGCTCGAAG CGCGGGTGGC CGACTGGCAC
GATGCACGGG TGTCGCTGGC AGCCGAGGTT GCCGATAACT ATGTGCAGTT CCTGGGCTGC
CGGATGCTGG CCGAGGCCTA CCAGGCAGAA GCCGCCTCCC AGGCCAGCAC CTTGCGCATC
ACCCAGACCG CCATCACCGC CGGCCTCACC GCAAGAGCCG ACGGCGACTT GGCGGCGGCC
AGCGCTGCGA ATGCGAATGT CACCGCCATC GCCCAGGGCA TCGAGTGCGG CGTCCTGCTC
AAGGCACTGG TGGCCCTGAC GGGCGAGAGC GAGCCCGCGC TGGGGCTTGT GCTGGATACG
CAGCCGCCGG CCCTGCGCGA CCCCGAGGGC ATCAGCGTGG CCAGCGTGCC GGGCAATTTG
CTGCGCCAGC GCCCCGACCT GGCGGCCAGC GAGCGGGCGC TGGCCGCTGC CTATGCGGAC
ATCGGACAGG CCGACGCCGA CCGCTATCCC AGCCTGTCGC TGGGCGGCTC GATCTCGCTG
TCCGCTTCCA GCCTGGCCTC ATCGGCTACC AGCTGGTCCT TTGGCCCGTC CCTGTCGGTG
CCCGTGTTCG ACGGCGGCAA GCGAAAGGCG GCCGTGGCAT CGGCCGAGGC CAGCTACCAG
GAAGCGCTGG CCAGCTACCA GAACGCGGTG CGCAGCGCCG TGAAGGAGGT CGAGCAGGCC
TTGCTCAGGC TGGACGGCGC GGCGCGGCGC TACCAGGATG CGGAGCGCGC CGCCCAGGGT
TATAGACGCT ACTTCGAGGC GGTTGAAAAA AACTGGCGGG CCGGCAATGT CAGCCTGCTC
GACCTGGAAG AGGCGCGCCG CTCGGCCATC ACGGCCGAAA GCACGCTCAG CACGCTCAAG
CGCGACCGGC TGCGCTACTG GATTGCCCTG TACAAGGCGC TGGGCGGCGG CTGGTCAACC
CAGGCGCAAA GCGCTGCGCC GGCTTCTGCC CCAGGTGCCA AGCCGCCGGC AAGCGGACAC
AACATCGGCC CGCTCAGCGA CACGCTGGCC AGCGCGGCTT CATCAAACCA AGGATTTGCG
CCATGA
|
|---|
| Protein sequence | MPAGIEKKAL QSRHAGNFPS LFTGLIASLL MAGCMTQPAY RTPEVRMPAA WHAPQPHAGS
RQQLADWWAR FDDPVLSRLI HTAEEGSPSL AQAAARIAGA RATLASSQAG ALPSVSGSAA
LSRARQAQGS GQGQGQPGSS TLTSRSAGLD ASWEIDLFGK LRKGSEAAEA RLEARVADWH
DARVSLAAEV ADNYVQFLGC RMLAEAYQAE AASQASTLRI TQTAITAGLT ARADGDLAAA
SAANANVTAI AQGIECGVLL KALVALTGES EPALGLVLDT QPPALRDPEG ISVASVPGNL
LRQRPDLAAS ERALAAAYAD IGQADADRYP SLSLGGSISL SASSLASSAT SWSFGPSLSV
PVFDGGKRKA AVASAEASYQ EALASYQNAV RSAVKEVEQA LLRLDGAARR YQDAERAAQG
YRRYFEAVEK NWRAGNVSLL DLEEARRSAI TAESTLSTLK RDRLRYWIAL YKALGGGWST
QAQSAAPASA PGAKPPASGH NIGPLSDTLA SAASSNQGFA P
|
|---|
| |