| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2961 |
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| Symbol | |
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| ID | 4688902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3124416 |
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| End bp | 3125309 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639835974 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_983181 |
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| Protein GI | 121605852 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.277039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00507473 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAATG CAAAATCTTG TCAAGCGACA ATCCAGCGCA TGAATCCAGG CCCCTCCCCG
CACCCCTCCA GCCTGCAAGG CGTCAGCCAT TACGAGAACT TTCCGGTCGC GTCCTTGCTG
TGCCCGCCGC ACCTGCGCCC GGCGATTGCC GCGATTTACT GGTTTGCCCG CACCGCCGAC
GACATCGCCG ACGAGGGCGA TGCGCTGCCG CAGGCGCGGC TGGACGACCT GGCGGCCTAC
CGCGCCGACC TGATGGCGAC GGCTGCCGGC CGGGCGCCCT CGCCGCGCTG GGCCGATGTG
TTCGGGCGGC TGGGGCCGGT CATCCGGCAA TTCGCCCTGC CCGTCAATTT GCTGGCCGAC
CTGCTCAGCG CCTTCGAGCA AGACGTGGTC AAGCAGCGCT ACGCCAGCCA GGCCGAACTG
CTCGACTACT GCCGGCGCTC GGCCAACCCG GTCGGCCGGC TGCTGCTGCA CCTGTACGGC
GTGAAGGATG CGCCATCGCT GATCGAGAGC GACTGCATCT GCAGCGCGCT GCAGCTGATC
AACTTCTGGC AGGACCTGGG CGTTGACATT CCACGCGGCC GCATCTACCT GCCCGCCGAC
GCCTGGGCGC CGCACGGGGT TGACGAAGCG CAGCTGCTGG GCTTGCAAAG CAACCAGAAT
ACTATAAATT TGATAGCTAC TCACGTCAGT CAGGCGAGCG CAATGATGCT AAAAGGCTCG
CAACTGGTGA AAAAAGTGCC AGGGCGCGGC GGCTGGGAAC TGCGGCTGGT GGTGCAAGGC
GGCCTGCGCA TCCTGGACAA GATAGCAGCG CAGGGCTTCG ACACGCTGCA GCGGCGGCCC
AAGCTCGGCG CCTGGGATGT GGCTGTGATG GGCTGGCGGG CACTCTGGAT GTGA
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| Protein sequence | MRNAKSCQAT IQRMNPGPSP HPSSLQGVSH YENFPVASLL CPPHLRPAIA AIYWFARTAD
DIADEGDALP QARLDDLAAY RADLMATAAG RAPSPRWADV FGRLGPVIRQ FALPVNLLAD
LLSAFEQDVV KQRYASQAEL LDYCRRSANP VGRLLLHLYG VKDAPSLIES DCICSALQLI
NFWQDLGVDI PRGRIYLPAD AWAPHGVDEA QLLGLQSNQN TINLIATHVS QASAMMLKGS
QLVKKVPGRG GWELRLVVQG GLRILDKIAA QGFDTLQRRP KLGAWDVAVM GWRALWM
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