| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2906 |
|---|
| Symbol | |
|---|
| ID | 4686790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3061067 |
|---|
| End bp | 3061987 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639835913 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_983126 |
|---|
| Protein GI | 121605797 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0327296 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0416217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCGC TAGTAAATAA CCGTCTTGAT TTGAACATCA AGACACATCT GAAAAGTGTA
CGCAGCGGCC TTGCCACGGT CGCGGACGAT ATTGCCCGGG GATTTTTCGT TATCACCCAC
AGCAGCTTTG CCCTTCTGGG CCTGGCTGTC GTGTTTGCCG TGGTCACCTT GATGGCCCGG
CCCGACCTGC GTGACGCGGG CGAAGTCAGG CTCATGGCGT GGCTGCAGGA ACGCCGCGCT
CCAGTGGTTA CCCCGGCTAC CCTGGTTACC CCGCAAGTGG CCGTGCTCAA GGAGCCGGTT
CCGGTTGAAC CCGCTGCCAC CCCCAAGCCC AAGGCACTTT CCACCCAGCA GGCCGCAGTG
GCCTCGTGGA TCAGCAAGAA ATATTCGGTG GCGCTCGAAC CCGTGGGCGC CCTGGTCGCG
GAAGCCTTTG AGATCGGCTA CAAGGTCAAG CTCGACCCGA CGCTGATCCT GGCCATCATG
GCGATTGAAT CGGGCTTCAA CCCGTTTGCC CAGAGCCCGG TGGGCGCGCA GGGCCTGATG
CAGGTGATGA CGCAAGTCCA TCACGACAAA TACGCCAAGG TGGGCGGCAA GCTGGCGGCC
TTTGATCCGA TGGCGAACCT GCGCGTTGGC GTCAAGGTGC TGCAGGAATG CATCAGCCGC
GCCGGCTCCA TTGAAGGCGG GCTGAAATAC TATGTTGGCG CGGCCAACCT CGAAAGCGAT
GGCGGCTATG CCGGCAAGGT CATGGCCGAG CATGCGCGCC TGCTGGCCGT GGTCGGCGGC
AAGCGTCCGC CCACATCGCG GCAGTATGCC TCTCCAGCGC CTTCGCGCCC TGTTCCGGTG
TCATTGCCGG CCAACGCTTC GGCCAGGCAG GAGTCGAACG AGAAGCCAGC AGAAGAAGTG
GCGCTGCTGG GTCAGTCCTG A
|
|---|
| Protein sequence | MTALVNNRLD LNIKTHLKSV RSGLATVADD IARGFFVITH SSFALLGLAV VFAVVTLMAR
PDLRDAGEVR LMAWLQERRA PVVTPATLVT PQVAVLKEPV PVEPAATPKP KALSTQQAAV
ASWISKKYSV ALEPVGALVA EAFEIGYKVK LDPTLILAIM AIESGFNPFA QSPVGAQGLM
QVMTQVHHDK YAKVGGKLAA FDPMANLRVG VKVLQECISR AGSIEGGLKY YVGAANLESD
GGYAGKVMAE HARLLAVVGG KRPPTSRQYA SPAPSRPVPV SLPANASARQ ESNEKPAEEV
ALLGQS
|
|---|
| |