| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2726 |
|---|
| Symbol | |
|---|
| ID | 4688356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2872348 |
|---|
| End bp | 2873055 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639835734 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_982949 |
|---|
| Protein GI | 121605620 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.936769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0467281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAC TCCTTAAAGT TGAAAACCTG CGCGCCGGCT ACGGCCAGGC CGTCGTGCTG
AACGATGTGT CTCTGTCGCT GGGCGAAGGC CAGACGCTGG CCCTGCTCGG GCGCAACGGC
ACCGGCAAGA CCACGCTGAT CAACACGCTG GCCGGCGCCA CGCGCCAGCA TGGCGGCAGC
ATCTCGCTGG GCGGCATTGC CCTGCACAAG CTGGCTTCGC ACGAGCGCGC GGCGGCCGGC
ATCGGCTGGG TACCGCAGGA GCGCAACATC TTCAAGTCAC TCACGGTGCA TGAAAACCTG
ACGGCGGTGG CCCGGCCCGG CCCCTGGAAC CCGGACCGGG TGTACAAAAT GTTTGCGCGC
CTGGCCGAAC GCAAGACCAA CCTGGGCACG CAGCTGTCGG GCGGCGAGCA GCAGATGCTG
GCTGTCGGCC GCGCGCTGGT GCTCAACCCG AAGTTGCTGC TGCTCGACGA GCCGCTCGAA
GGGCTGGCGC CCATCATCGT CGAGGAGCTG CTGCGCGCGA TTGCCCGCAT CACCCGCGAC
GAGGGCCTGT CGGCCATCAT CGTCGAGCAG CATCCGCAGG CCATCCTGGC GATCAGCCAC
CGTGCCGTGG TGCTCGACCA CGGCACGGTG GTGCACAGCG GCAGCGCAGA GGCCCTGAGC
GAGCAGCCTG AGTTGCTAGA CCGCCTGCTG GGTGTCGCCC GGGCTTGA
|
|---|
| Protein sequence | MAELLKVENL RAGYGQAVVL NDVSLSLGEG QTLALLGRNG TGKTTLINTL AGATRQHGGS
ISLGGIALHK LASHERAAAG IGWVPQERNI FKSLTVHENL TAVARPGPWN PDRVYKMFAR
LAERKTNLGT QLSGGEQQML AVGRALVLNP KLLLLDEPLE GLAPIIVEEL LRAIARITRD
EGLSAIIVEQ HPQAILAISH RAVVLDHGTV VHSGSAEALS EQPELLDRLL GVARA
|
|---|
| |