| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2583 |
|---|
| Symbol | |
|---|
| ID | 4688810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2717544 |
|---|
| End bp | 2718482 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639835591 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_982807 |
|---|
| Protein GI | 121605478 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.672068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0132829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCC GTTTAGCATC TTTGCAAAAC CTGAATCTGA AAGTGAACTG GGACGATCTG
CGTCTGCTGA TCGTGGTGGC GGGCCATCCG TCCTTGCTGG AAGTGGGGCG GGTGCTGGGC
ATTGCGACCA CCACCGTGTC GCGCCGCATT GCGGCACTGG AGGCTGGCGT GGGGGCGCAA
CTGGTGCATC GCACCCATGT GGGCACTGTG TTGACCGCCG CGGGCAAGAC GCTGGTTGCG
GCCCTGGAGC CGTTGGCGCT GGAGCTGGAG GCCACGGTGC GGCAAAGCGC GGGGGCCGAC
AGCCAGATCG AAGGCGCCAT CAAGGTGTCG GTGGCAGAGG GCTTGGTGCC GCTGACCTTG
GAGGCCATCC AGTCTTTCCG CACGGCCCAT CCGGGCGTGG TGTTTGAGCT GGACGCGTCG
CACCGCAGCT TGGACATGGG TAAAAACGAA GCCGATGTGG CTGTGCGCAT GCTGCAGCCC
AAGTCGGATG GACTGGTGGT GCGGCGCATT GGTCCGGTCC ATTTTGGTGT CTATATGTCC
AGCCAACTGC CTTTGGCCCG GTTTGTGCCG CGTGGGGCGG GCCTGTTGGC GCGCCTGGAC
GGTGTGGTGC TGGGCGGCGA ACTGGCGGGT CTGAAGGAGT CGGTGTGGCT GCGCTCGCGC
GTGCGGGCCG TGGCGCTGCA AACGCAAACG CTGGGCTCGC TCATCGACGC TGTGCGGCGC
GGCATTGGCG TGGGTGTGAT TCCAGATGAA CTGGTGCGGG TCGATACCCG CCTGCGCCGG
CTGTGCGACT GCGAAGCCAT GCCGCGCAAG ACGCTCTGGC TGATCATGCA CCAGCGCACG
GCGAAGTTGC CCAGGATTCG GCTGTTTGCC GACCACATGA CGGCGCATTT ACGCAATGCT
TCGGCACCCG CGGGTACAAC CGTTGCGCCA GAGGTCTAA
|
|---|
| Protein sequence | MQVRLASLQN LNLKVNWDDL RLLIVVAGHP SLLEVGRVLG IATTTVSRRI AALEAGVGAQ
LVHRTHVGTV LTAAGKTLVA ALEPLALELE ATVRQSAGAD SQIEGAIKVS VAEGLVPLTL
EAIQSFRTAH PGVVFELDAS HRSLDMGKNE ADVAVRMLQP KSDGLVVRRI GPVHFGVYMS
SQLPLARFVP RGAGLLARLD GVVLGGELAG LKESVWLRSR VRAVALQTQT LGSLIDAVRR
GIGVGVIPDE LVRVDTRLRR LCDCEAMPRK TLWLIMHQRT AKLPRIRLFA DHMTAHLRNA
SAPAGTTVAP EV
|
|---|
| |