| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2531 |
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| Symbol | |
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| ID | 4686189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2667227 |
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| End bp | 2667751 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639835538 |
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| Product | conjugal transfer protein TraF |
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| Protein accession | YP_982755 |
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| Protein GI | 121605426 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.400646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.92431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGCCA AACAACTGAA CCTCGTACCG CTTTATGTGA CGCTACTTGC GATGTCAGCG
ACAGCGATTT TTGCCATCGT CGCAAAGTCA TCTGGCCTCG TTTTGAATGT CACTGGATCG
ATGCCTGACT TGGTCTACAA ATTAGGCCTT GGCGAAAAGG GCAGCCTAGT CAGCTTTTGC
TCGCCGATTC CGCATCCGTC CATCGGTCAC GGCGCGTGCC CTGATGGCAG CATGCCCTTG
ATAAAGCGCG TGGTGGGCGT TGCTGGCGAT CTCGTGACAG CAACCGATGC CGGTATTGAC
ATCAACGGGC AGCCAGTGCC GAATTCAAGG CCACTGGATC TGGACACCAA GGAAAGCGCC
CTTCCCCATC TGCGCGGATC GTTTAGCCTC AAACAAGGAG ATATCTGGAC TGCTGGTGAA
CACCCGAACA GCTTTGATTC ACGGTATTTT GGGCCTGTGA AATTTCCAAG GGATGACCAC
CACAACAGGA CACGCGAATC CTCGTTCAGA TTTGCCGATG GGTGA
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| Protein sequence | MKAKQLNLVP LYVTLLAMSA TAIFAIVAKS SGLVLNVTGS MPDLVYKLGL GEKGSLVSFC
SPIPHPSIGH GACPDGSMPL IKRVVGVAGD LVTATDAGID INGQPVPNSR PLDLDTKESA
LPHLRGSFSL KQGDIWTAGE HPNSFDSRYF GPVKFPRDDH HNRTRESSFR FADG
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