| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2505 |
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| Symbol | |
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| ID | 4688367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2639965 |
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| End bp | 2641590 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639835513 |
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| Product | Type IV secretory pathway TrbL components-like protein |
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| Protein accession | YP_982730 |
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| Protein GI | 121605401 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGTCG CCATTTTTCT GCTGCTGTGC GGCATCACGC CATGGGCGAA TGCCGCTGGC
ATGATGGACA CGCTGGTGAG TCAGGTTCAA GGGGCATCCG GCGGCTGGAT GACGACTGCT
TTGGGTTACG CCACCAATTT GTTCTTTGGC TTGGCTGCCC TTGAATTCGC CTGGTCGGCG
ATTCAGCTCA CGCTCAAAAA GTCAGAGCTT TCGGAAATCA TGGTGGGGAC CTTGTTCAAG
GTCATGTCCC TGTCATTTTT TGCCATGGTG CTGATCAAGG CGCCCGAGTG GATTCCTGCC
ATCATCAATT CCTTCAAGGC GGCCGGTGCC GGTGTGGGTG GGACTTCGGT TTTGTCGCCA
TCGGCGGTGT TTGATCAAGG CTTGCAAGTA GCCGCCAGTC TGATGCAGTT CTCCAATGAT
GCCGCGCCCA GCACGGGCAG CATGATCATC AACACCTTGA CCAATTCCGG TCAGGGTCTT
GGCAAATTCA TGTTGAGCTC CATCATCATT GGCGTTGCCT CTGTTTTCAT CATTCTTGGC
TACGGTCTGA TTGCCGTCCA ACTGCTCATT ACGTTGGTTG AGTCGTATTT GATCATTGGC
GGTGGTGCCT TGATGCTCGG GTTTTCGGGC TCACGCTGGA CGCACAATTT GTCAGAAAAG
TACTTTGGCT ATGCGATTTC CATTGGCGTC AAACTGTTCA CCATCTATTT GATCATTGGC
TTTGGTGACA GCTTCACCCA AGCCCTGAAA GACACCATTG CAGCTGCCTA CGCGGCGCAC
CCCGAAGGCC CCAGTTTTGG TGACTATTTG GGCGTGGGGG GCGCGTCGTT GTTCTATGGA
GTCACTGGCT ACATGGCACC GGGCCTGGCG GGGTCGATGC TCAATGGCAC GGTGGCCATG
TCTCTGCAAA GCGCTGGCAC TGCGGCTGGC ATGGTGGGTG GCGCGCCGGT GGCGGCGGGA
CTTGCTGCAA GTGCGGCTGG TGCGCGCGCC TTGGGGCTTG CGGGCGGTGC CATGGGTGCG
TTGATGCCCG TTCAAAGAGC TGCGGGTGCC ATTGGTGGCT CTTCTGCTGG CGTCGGATTT
GGTGGTGGCA TCAGTGGCAT GGTCAACCCT GTCAACCCTT TTCAACCCAG TGCGAACGCG
AGCAGCGGTG GCCAGGGCGT ACCCGGTGGT TTGGGCGCTG CAGTCCAGAG CGGCATGGCT
GGCAAGTCGG GTGGCGGCAC TGGCAGTCAC CTCGGTGCAT CTTCACCCTC CCCCTCGCCG
CCTCCTTCTG ACAGTCCTGT GGGTTGGCAA GGCTTGAACG CGGGTAGTCA AAGTTTTGGC
CAGACCCAAG CTCCCGGTTT TGTTGATGCG CGTTTTGATC CATTTGCCAG TCCACGTGAT
GGCGGCTCCG GCAAAAGCCA CCCAACCAGC AACGAAACCG GTGGCATGCC TGCCAATTCA
TTCGATGCAA AGTCTGCCCA ACAACGATTT GAGGCTGACT ACAAGCAAGA ACCAAGTGGC
GTGGCAGACA AGCTCAACAG TTTTTCAAAG CGTTTGCAAT ACGCTGCGGA TCGCAGGAAG
CCGCATTGGG TGAGTGATGG TCATCTGGGT CACGCGCCAG GCTTGCGCAT GGGGCTCGAT
TCTTGA
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| Protein sequence | MRVAIFLLLC GITPWANAAG MMDTLVSQVQ GASGGWMTTA LGYATNLFFG LAALEFAWSA
IQLTLKKSEL SEIMVGTLFK VMSLSFFAMV LIKAPEWIPA IINSFKAAGA GVGGTSVLSP
SAVFDQGLQV AASLMQFSND AAPSTGSMII NTLTNSGQGL GKFMLSSIII GVASVFIILG
YGLIAVQLLI TLVESYLIIG GGALMLGFSG SRWTHNLSEK YFGYAISIGV KLFTIYLIIG
FGDSFTQALK DTIAAAYAAH PEGPSFGDYL GVGGASLFYG VTGYMAPGLA GSMLNGTVAM
SLQSAGTAAG MVGGAPVAAG LAASAAGARA LGLAGGAMGA LMPVQRAAGA IGGSSAGVGF
GGGISGMVNP VNPFQPSANA SSGGQGVPGG LGAAVQSGMA GKSGGGTGSH LGASSPSPSP
PPSDSPVGWQ GLNAGSQSFG QTQAPGFVDA RFDPFASPRD GGSGKSHPTS NETGGMPANS
FDAKSAQQRF EADYKQEPSG VADKLNSFSK RLQYAADRRK PHWVSDGHLG HAPGLRMGLD
S
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