| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2504 |
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| Symbol | |
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| ID | 4689125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2639249 |
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| End bp | 2639950 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639835512 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_982729 |
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| Protein GI | 121605400 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02511] type III secretion effector delivery regulator, TyeA family
[TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCCA AGAAGCTGCT TTCCAGCGCC GCAGTGGCGG CTGCCTTTGC TTTTGCGTTG
ATACCATCCG CTCACGCCGG TGGCGGTGGG TTTGTGGGTG CCATGGAAGC CACCCAGTGG
CTGAACAACG CCGAGCTGGT CAATGTCTAT TCAAGCAATC TGGAACAGCT GCAGCAGCAA
ATCCAGATGT ACCAGAACAT GTACCAGAAC ACGCTCGGCA TTCCGATTCA GGCGTGGAGC
GGCATTGCGG CGCGTTTGAC ATCGTTGGTC AGCACGATTC AAAACACGCA AGGCATTGTG
AACGCCACTG TCAATTCCAT CACCGACATG CAAACAACCT ACGGCAACGG AAATTTGCTT
TCGAACCAAC AGCAAAATCT GGTGAATTGG AACAAGGGCT TGAACAACCA GATTGGGGCG
GCTTTGCAGC AATTGGGCTT GAACGCAAAC AATTTTTCGA CAACGCAAAG TGCTTTGCAG
CAAATTCAGT TAGCATCCCA GACTGCGGCG GGCCGGTTGC AAGCAATTCA GGCTGGCAAT
CAAATTGCCG GCATGATGAT CAATGAAACC CAAGCACTGC ACGGCACCAT CATTGCGGCG
GAACAGGCCC GACTGAATGC CATCGCCAAA CAGGAAAACG AAAAGTACCA AGACGAGCTT
TTGTACCGCA ACTTCTTTCG TAACCATTCC GGCCAATACT GA
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| Protein sequence | MKPKKLLSSA AVAAAFAFAL IPSAHAGGGG FVGAMEATQW LNNAELVNVY SSNLEQLQQQ
IQMYQNMYQN TLGIPIQAWS GIAARLTSLV STIQNTQGIV NATVNSITDM QTTYGNGNLL
SNQQQNLVNW NKGLNNQIGA ALQQLGLNAN NFSTTQSALQ QIQLASQTAA GRLQAIQAGN
QIAGMMINET QALHGTIIAA EQARLNAIAK QENEKYQDEL LYRNFFRNHS GQY
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