| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2480 |
|---|
| Symbol | |
|---|
| ID | 4689265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2618182 |
|---|
| End bp | 2618817 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639835488 |
|---|
| Product | OmpW family protein |
|---|
| Protein accession | YP_982705 |
|---|
| Protein GI | 121605376 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.586592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAA AAGCCATTTC CCTCGCCGCG GTTGGGATGC TGATGCTCAG CCATGCATAT
GCCGAGGATT CCCGCTGGTC CTACCGCATC GGTGCCACCA ACGTGGCCTT CGATGCGAGC
GCCGAAGTCT CTATGAATGG AGGGAGAGTG CCGGGAGGCA GTGCCGACGC CAGCGACAAC
AACGCTTTGA CGTTTGATTT CGGCTATGTC ATCAACGACA GCTGGAACGC GCGGTTGATC
GTTGGCATTC CTCCCACCAC AAAAGTGACG GGCGCAGGAA CGCTGCCCCC CATTTTGTTG
GGCCGCATTC AATACGCCCC TGCGGTTTTG TCGGTGACCT ACAACCTGCC TCAGATGGGG
GGGATTCGCC CTTACGTGGG GGCGGGGATC AACTACACCC GAATTTTAAA AAGCGAAGAC
GCCAATCTGA CCTCATTCGA TGCAGATCAT GCTTGGGCAC CTGTGCTCCA CATCGGCGCG
GAAGCCGACA TCAACCGCGA CTGGTTTGTC AGCTTTGATC TCCGCAAACT TTATTTGAAA
ACAGATGCAT CTGGGTTTCT TGGCCCGCAA GTCGCCACGG CCCGCGTAAC ATTGAATCCG
TTGTTGACCT CGATTGCGAT TGGTCGGAGA TTTTGA
|
|---|
| Protein sequence | MIKKAISLAA VGMLMLSHAY AEDSRWSYRI GATNVAFDAS AEVSMNGGRV PGGSADASDN
NALTFDFGYV INDSWNARLI VGIPPTTKVT GAGTLPPILL GRIQYAPAVL SVTYNLPQMG
GIRPYVGAGI NYTRILKSED ANLTSFDADH AWAPVLHIGA EADINRDWFV SFDLRKLYLK
TDASGFLGPQ VATARVTLNP LLTSIAIGRR F
|
|---|
| |