| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2144 |
|---|
| Symbol | |
|---|
| ID | 4688333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2285137 |
|---|
| End bp | 2286045 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639835154 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_982373 |
|---|
| Protein GI | 121605044 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.262802 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00398502 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATTTCG ACCTGACCGA CCTGCGCCTT TTCGTCGTCA CCGCCGAAGA AGGCAACCTG
ACCCGCGCTG CTGCCCGGCA GCATTTGTCG CTGGCGGCGG CCAGCGCCCG CATCAAGGCG
CTCGAAGCGC AGGCCGGGCT GCCCCTGCTC TACCGCGAAG CGCGCGGAAT GCGCCTGAGC
CCGCCCGGCG AAGCCTTTTT GCACCATGCG CGCGGCGTGC TGCGGCAGAC CGAGCAGCTG
CGCCTGGACC TGCAGGAGTA CGGCGGCGGC CTGCGCGGCC ATGTCCGGGT GTTTGCCAAC
ACCACGGCCG TGACGGACTT CCTGCCCGAA ATCCTGCCGG GATTTCTGCT GGACAACCCG
CGCGTGAACA TCGACCTTCA GGAAAAACCG AATACAGAGA TAGCACGCGG CGTGCTCGAC
GGGCGCGCGG ACATCGGCAT CGTGTCCGCC CAGGTCGATA CGCTGGGCCT GCGGGCGATT
CACTTCAGCA CCGACCGGCT GGTGCTGGTG ACCTCGCGCC AGCACCGCTT CGCCGGCCGC
CAGCGCATTG CCTTTTCCGA AACGCTGGAC GAGGATGCCG TGGCCATGCA GCAAGGCAGC
ACCCTGCAGA CCTTTCTGAT GCAGGTGACC GAAAAGCTGG GCAAGCCGCT CAAGCTGCGC
ATCCAGCTCA GCAGCTTTGA CGCCATGTGC CGCATGATTG GCGCCGGCGT GGGGATCGGC
ATCGTTCCCG AGAGCGCGGC GCGGCGCAAC CAGGACAGCA TGCAACTGGC GCTCATCGAG
TTGCTCGAGC CGTGGAGCGT GCGCGAGCGC TACATCCTGG TTCGAGAGCA TGAAGCCCTG
CCGGCCTATG CGCAGTCGCT GATTGACGCG ATTTGCGCGC ATTACAAAAA CCCCCAGGCG
CTTGAGTAG
|
|---|
| Protein sequence | MHFDLTDLRL FVVTAEEGNL TRAAARQHLS LAAASARIKA LEAQAGLPLL YREARGMRLS
PPGEAFLHHA RGVLRQTEQL RLDLQEYGGG LRGHVRVFAN TTAVTDFLPE ILPGFLLDNP
RVNIDLQEKP NTEIARGVLD GRADIGIVSA QVDTLGLRAI HFSTDRLVLV TSRQHRFAGR
QRIAFSETLD EDAVAMQQGS TLQTFLMQVT EKLGKPLKLR IQLSSFDAMC RMIGAGVGIG
IVPESAARRN QDSMQLALIE LLEPWSVRER YILVREHEAL PAYAQSLIDA ICAHYKNPQA
LE
|
|---|
| |