| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1875 |
|---|
| Symbol | |
|---|
| ID | 4686778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1999102 |
|---|
| End bp | 2000247 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639834882 |
|---|
| Product | Pyrrolo-quinoline quinone |
|---|
| Protein accession | YP_982106 |
|---|
| Protein GI | 121604777 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.210661 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AGTCTTTTTG GTCATTTGCG CTTTCTGTAC GGGCGCCTCT AGCTATCATT
AGTGTAGCAA TGTTGGCCGG TTGTTTTGGC GGCGTGAAAA AGCCCCAGCC CACGGAACTC
CAGCCGGTGA CCGCCCTGGT CTCGGTTCGC CAAAGCTGGA GCAACCGCAT GGGCCAGGTC
AGTTTTCCGC TGGATGCGAG CGTTTCCGGC AACAGCGTCG GCGTTGCCAG CGACGACGGC
ACCGTGGCGC TGATCGATGC ACAAACTGGC CGCGACATCT GGCGCATGGC GCTGAAGACA
CCCATCGCTG CCGGCGTTGG AAGCGATGGA AAAGTGCTTG CCGTCGTCAC GAAAGCGAAC
GAAGTCGTTG CCATGCAGGC TGGGCGCGAA CTGTGGCGCC AAAAGCTCAA TGCCCAAGCG
TTCACGGCTC CGTTTGTTGC GGGCGAGCGG GTGTTTGTTC TCGCTGCGGA CCGTTCGGTG
AATGCCTTTG ATGGCCAGAC CGGCCGCAAG CTGTGGACCC AGCAGCGTTC CAGTGAACCG
CTGGTCCTGC GCCAGTCCGG TGTCATGCTG GCCGTTGGCG ACACCCTGGT CGTTGGTCTG
GCCGGGCGGC TGGCAGGCAT GAACCCTGCG GATGGCAGCA TTCAATGGGA AGCGCCGATT
GCCACGCCGC GCGGCATCAA CGACGTTGAG CGGCTGGTTG ATCTGGTCGG AAGCGTCAGC
CGCGTCGGTG ACAGTGTCTG CGTACGGGCT TTTCAGGCCA GCATTGGCTG CGTCAACACT
GCGCGTGGCA GCGTGTTGTG GACCAAGCCT GCCAACGGCG TGCAGGGCAT TCAGGGTGAT
GATCGTCTGT TGTTTGGCAC CGAAGCCGAC GGCACCGTCA TGGCCTGGAA GCGCACCGAT
GGCGAACGTG TCTGGTCCAG TGAGCGGCTG CGTTATCGGG GGTTGACCGC GCCGCTGGTG
GCCGGCCGCT CTGTCGTGAT TGGCGATGCC ACCGGATTTA TCCATTTGCT GTCGCGTGAA
GATGGCTCCC TGCTCAATCG CCTGAGCACC GACGGCTCGG CAATTTCCGC TGCCCCGGTG
CTGGCGGGCA ATACCCTGGT CGCCGTCACC CGTAACGGCG GCATTTATGG CTTCCAGCCC
GAATAA
|
|---|
| Protein sequence | MKKQSFWSFA LSVRAPLAII SVAMLAGCFG GVKKPQPTEL QPVTALVSVR QSWSNRMGQV
SFPLDASVSG NSVGVASDDG TVALIDAQTG RDIWRMALKT PIAAGVGSDG KVLAVVTKAN
EVVAMQAGRE LWRQKLNAQA FTAPFVAGER VFVLAADRSV NAFDGQTGRK LWTQQRSSEP
LVLRQSGVML AVGDTLVVGL AGRLAGMNPA DGSIQWEAPI ATPRGINDVE RLVDLVGSVS
RVGDSVCVRA FQASIGCVNT ARGSVLWTKP ANGVQGIQGD DRLLFGTEAD GTVMAWKRTD
GERVWSSERL RYRGLTAPLV AGRSVVIGDA TGFIHLLSRE DGSLLNRLST DGSAISAAPV
LAGNTLVAVT RNGGIYGFQP E
|
|---|
| |