| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1839 |
|---|
| Symbol | |
|---|
| ID | 4689316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1959812 |
|---|
| End bp | 1961116 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639834845 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_982070 |
|---|
| Protein GI | 121604741 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.27938 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCA CTTTTCAGGC CGTCAAACCC TTCAACACCG GCCGCTGGGT CGTCTGGACG
CTGTATGCGT TGCTGCTGGT GGCCGCGCCG CTGCTGTTCA AGAGCAGCCT GTCGCTGACC
CTGCTGTCGC AGGCCGGTTA CCTGGTCATC ATCTGCCTGA GCTACAACAT CCTGCTGGGG
CAGGGCGGCA TGCTCAGTTT CGGCCATGCG GTGTATTCGG GGCTCGGGTC TTTCCTGGCG
ATTCATGCGA TGAACCTGGC GGCAAGCGGC CGCTTTTACA TTCCGCTGAG TCTGATCCCG
CTGGTCGGCG GCCTGTCGGG GCTGTTCTTT GCCGCCTTGC TGGGCTATGT GAGCACCAAA
AAGGCTGGCA CCACCTTTGC CATGATCACG CTGGGCATGG GCGAACTGGT GTTTGCGATG
TCGCTGATGT TCCCGGAATT CTTTGGCGGC GAAGCTGGCA TCACCACCAA CCGCGCCTAT
GGCAAGCCGC TGTGGGGCAT CACCTTCGGC CCGCAGATCC AGGTGTATTA CCTGATCGCG
GTGTACTGCT TCTTTTGCAC CGCCGCCATG TTTGCCTTCA CCCGCACGCC GCTGGGCCGC
ATGTTGAACG CCGTGCGCGA CAACCCCGAG CGCGTCGAGT TCATCGGCTA CAACCCCAGG
TGCGTGCGCT ACCACGCCTT CATCATCGCC GGCTTTTTTG CCGGCATCGG CGGCGGACTC
GCGGCGATCA ATTCGGAAAT CGTGACGGCC GAAGTGGTCG GCAGCGTGCG CTCGGGCAGC
CTGCTGCTGT TCACCTTCCT GGGCGGCGCG ACCTTCTTTT TTGGCCCCAT CCTGGGCGCT
GTCCTGATGG TGCTGGCGCT GGTCTGGCTG TCGGAGCTGT CGATGGCCTG GCTGCTGTAT
GTCGGGCTGA TGTTTTTGTT CATGGTGATG CATGCGCCCG GCGGCATTGC CAGCCTGATC
GTGATGAACC TGCGCGTGGC TTCGTTCGGC AAGCTCAAGA CCTTGTGGCT GGGCTATCTG
GCGCTGGCCG TGACCGCCTT TGCCGCGCTG ATGGGCGCTG CCGCCATGGT AGAGATGATT
TACCACCTGC AACTCAACGC CGCAGTCGGG CCTGAACTGA AGTTCATGGG ATTGACGCTC
AACGCCATCC AGTCCGCTAC ATGGCTGAGC GCCGGACTGG TTTTCCTGAC CGGCCTGGGG
CTGTTCGAAC TGGCGCGCCG CAGGTTCGTT GTGCAATGGA GCCGTATACA AGACGAAATC
GAGGATGAAA TCGAAACCGA GATCAAGCGC CGGGAATTGC TATGA
|
|---|
| Protein sequence | MASTFQAVKP FNTGRWVVWT LYALLLVAAP LLFKSSLSLT LLSQAGYLVI ICLSYNILLG
QGGMLSFGHA VYSGLGSFLA IHAMNLAASG RFYIPLSLIP LVGGLSGLFF AALLGYVSTK
KAGTTFAMIT LGMGELVFAM SLMFPEFFGG EAGITTNRAY GKPLWGITFG PQIQVYYLIA
VYCFFCTAAM FAFTRTPLGR MLNAVRDNPE RVEFIGYNPR CVRYHAFIIA GFFAGIGGGL
AAINSEIVTA EVVGSVRSGS LLLFTFLGGA TFFFGPILGA VLMVLALVWL SELSMAWLLY
VGLMFLFMVM HAPGGIASLI VMNLRVASFG KLKTLWLGYL ALAVTAFAAL MGAAAMVEMI
YHLQLNAAVG PELKFMGLTL NAIQSATWLS AGLVFLTGLG LFELARRRFV VQWSRIQDEI
EDEIETEIKR RELL
|
|---|
| |