| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1250 |
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| Symbol | |
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| ID | 4688334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1345602 |
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| End bp | 1346939 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639834253 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_981486 |
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| Protein GI | 121604157 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.05664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAA CCATCCGCTA CACCCTGCTG TCGCTGCGCG ATCTGGCGGT TTCCGCCGGT
CCCTTCCTGG TGCTGGCCGT CACCCTGCTG ACGCTGGCCT ACTGGTGGCT GGACCCGAAC
CCGCCCAAGC GCGTGACGCT GGCCACCGGC CCGGCGCAAA GCGCCTATGA GGAGTTCGGC
AAGCGCTACG CAAAAATCCT GGCCCAGGAC GGCATCGAGG TCGTGCTGCT GCCGTCGCAA
GGCTCGGCCG ACAATTTCCA GCTGCTGCGC GAAGGCAAGG CCGACCTGGG ATTTGTCCAG
GGCGGCACGC GTGAAGCCCG GCCCGAGGAC GAAGCCATGC TGGAGTCGCT GGGCAGCCTG
TTTGTCGAGC CGGTGTGGCT TTTTTACCGC AAGGATGTGC TGCCAAAATC CGCCGGCGCT
TCGCTCGATG CGCTGACCCA GCTGCAGGGC TTGCGCGTGA ACATCGGCAC CGCCGGAAGC
GGCATTCCCA GCCTGATGAA CAAACTGCTG GCCAGCAACA ACATCGATCC GTCCAGCCTC
AAGCTCTCCG AGCTGGAGCA GACGCCGGCC ACCGTTGCCT TCCTGGAGGG CCGGCTCGAT
GCCATCGTGT TCGCGTCCGC GCCCGAATCG CTGATGGTGC AGATGCTGCT GCAGACCCCG
GGCGTCGGGC TGATGGATTT TCCGCAAAGC GAAGCCTATT CGCGGCGCTT CGCCTTTCTG
AGCCCGGTCG TGCTGCCGCG CGGCGTGGTC GATCTGGCGG GCAATATTCC ATCGCAGGAT
GTGCGGCTGG TCGCCCCGAC CACGGCGCTG ATCGACCGCA AGGAAACCCA TCCGGCCCTG
CTGCAGCTGT TTGTTCAGGC GGGCAAGCAG ATCCATGGCG GCGCCGGCTG GTTCAGGCGC
GCGCGCGACT ACCCCAACCT GGCGAACAAC GAATTGCCGA TTGCCGCCGA GGCCGAGCGC
AGCATCCACA GCGACAAGCC TTTCCTGCAG CGCTACCTGC CCTTCTGGGT CGCCAATCTG
GTGGAACGCA TGTGGCTGGT GATGGGCATT ATTTTGGCTG TCATGCTGCC GCTGTCGCGC
ATCGTGCCGC CGCTGTACGA GTTTCGGGTG CGCTCGCGCA TTTTCCGCTG GTACGGCCAG
CTCAGGGACA TTGAAAACCG GGTTGACAGC GCCGACGAGC CGCACGCGCT GCTTGACGAG
CTGACCCACC TGGAACGCCG CGCCGAAAAA ATCAGCGTGC CGCTGTCTTA CGCCAGCGAG
CTGTATGCGC TGCGCAACAA CATCCAGCTG GTGCGCAGGA AACTGCAGGG CCGGCAAAAA
CACCCGGGCG TAGCATAA
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| Protein sequence | MSKTIRYTLL SLRDLAVSAG PFLVLAVTLL TLAYWWLDPN PPKRVTLATG PAQSAYEEFG
KRYAKILAQD GIEVVLLPSQ GSADNFQLLR EGKADLGFVQ GGTREARPED EAMLESLGSL
FVEPVWLFYR KDVLPKSAGA SLDALTQLQG LRVNIGTAGS GIPSLMNKLL ASNNIDPSSL
KLSELEQTPA TVAFLEGRLD AIVFASAPES LMVQMLLQTP GVGLMDFPQS EAYSRRFAFL
SPVVLPRGVV DLAGNIPSQD VRLVAPTTAL IDRKETHPAL LQLFVQAGKQ IHGGAGWFRR
ARDYPNLANN ELPIAAEAER SIHSDKPFLQ RYLPFWVANL VERMWLVMGI ILAVMLPLSR
IVPPLYEFRV RSRIFRWYGQ LRDIENRVDS ADEPHALLDE LTHLERRAEK ISVPLSYASE
LYALRNNIQL VRRKLQGRQK HPGVA
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