| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1124 |
|---|
| Symbol | |
|---|
| ID | 4688964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1197525 |
|---|
| End bp | 1198445 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639834128 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_981361 |
|---|
| Protein GI | 121604032 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.432246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACC TGGACCTGAC CACTTTGCGG TTGTTCGTGG CCGTGTGCGA CTCGCGCAGC
ATCGCGCGCG TGGGCGAGCG TGAAAACATC GTGCCTTCGG CCATCAGCAA GCGGCTGGCC
CAGCTGGAAC AGGATCTGGG ATGCCGCCTG CTCAAGCGCA TCCGGCGCGG CGTCGAACCC
ACGGCCGCCG GAGAAACCTT GCGCGAGCAT GCGCGCGGCC TGCTGGGCGC CGCCCGGCGC
ATCACGGACG ACATGAACGC CTACACCTCG GGCACTTCCG GCCTCGTGCG GCTGATGGCC
ACCACGTCCT CGGTGGCCGA GTTCTTGCCC GATGACATTG CCGAATTCTT GAAGCACCCG
GCGCACCACG CGATCCGCGT CAATGTGCAG GAGCAGTTCA GCCGCGACGT GGTGCGTGCG
CTACGCGAAG GCAGCGTGTC GCTGGGCGTG TGCTGGGACG CGGCCGATCT GTCGGGCCTG
CAGACCTTGC CCTACCGCCA CGACCACCTG GCCATCGTGA CGCACGAAGG GCATGCGCTG
GCCGGGCGGA CAGACATGGC GTTTGTCGAT TCCTTCGAGT TCGACCATGT GGCGCTGCCC
GCCGCCAGCG CCGTCCAGCT GATGCTGGCC CGGGCGGCCG CCGCCACCGG GCAGTCGATT
CGCTACCGGG CCGAAGTCTC GACTTTTGAA GCCGCCTTGC GCGTGGTGCG CTCGGGGCTG
GGCATCAGCG TGGTGCCCAG GGAAGTCGCG CAACCGCTGG CAGCCGCCTT CAATCTGCGC
ATCATTCCGC TGACGGATGC CTGGGCGCAG CGCCGCTTCG CCATCTGCTT TCAGGATGAG
CGTTCGTTGT CTGCCGCCGC AAAACTGCTG GCCGGGCACT TGGCCGAGGC GGGGAGGAAA
TCTCAGGCCT GGCACCCGTA A
|
|---|
| Protein sequence | MKDLDLTTLR LFVAVCDSRS IARVGERENI VPSAISKRLA QLEQDLGCRL LKRIRRGVEP
TAAGETLREH ARGLLGAARR ITDDMNAYTS GTSGLVRLMA TTSSVAEFLP DDIAEFLKHP
AHHAIRVNVQ EQFSRDVVRA LREGSVSLGV CWDAADLSGL QTLPYRHDHL AIVTHEGHAL
AGRTDMAFVD SFEFDHVALP AASAVQLMLA RAAAATGQSI RYRAEVSTFE AALRVVRSGL
GISVVPREVA QPLAAAFNLR IIPLTDAWAQ RRFAICFQDE RSLSAAAKLL AGHLAEAGRK
SQAWHP
|
|---|
| |