| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1055 |
|---|
| Symbol | |
|---|
| ID | 4688364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1113950 |
|---|
| End bp | 1114636 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639834054 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_981293 |
|---|
| Protein GI | 121603964 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0878912 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGT CTCTTTTTGC CACCGCTGCC GTGTTGTGCC TGACCGGAAC CGCCGCCTTT
GCGCAGGCTA CCCATGACGG CCGCTGGTAC ATTGCGCCAA CCGTCGGAGT GGTTATCAAT
GACAACCAAC GGCAAAAAGA TACCGGCGGC GCAGTAGGAT TGGCGGTTGG TAAAGCCTTG
AACGAAAAGT GGAATGTGGA ATTCGGAAGC CAGTACATCA AGCACAACTC AAATGACAAG
CAAGCCAGTC TTGGTGTCGA TGGCCTGTAT TTCTTCAACC GCAACCCCGA TTTCGCACCC
TACGCGGTAG TCGGCCTGGG TTGGGTACGC GAGGGCTCCA ATTTTGGCGG CCATAACGAC
AATGCGCTGC TCAAAGCCGG TTTGGGTTTC ACCAAGCAGC TGACGGACAA CATCGACTTT
CGCACCGATG CCCGTTACCA GGTCCATGGC AACAAGGGTA ACTCGGGTGG CTCGGGCAAC
CTGGGCGACT GGGTGATCTC CGCCGGACTG AACATTGCAC TGGGCCCCAA GGCACAGGCC
CCAGCCCCGG CCTATGTAGC GCCTGCCTAT GTTGCCCCGG CGCCCGAGCC CATAGCAGTG
ACGCCACCCC CAGTCGTTGC GCCAGTTGAA CCTGCGCCAG CGCCTTACGT GGCACCCCAG
CGCGCCACCA AGCAAGACCG CAACTGA
|
|---|
| Protein sequence | MKLSLFATAA VLCLTGTAAF AQATHDGRWY IAPTVGVVIN DNQRQKDTGG AVGLAVGKAL
NEKWNVEFGS QYIKHNSNDK QASLGVDGLY FFNRNPDFAP YAVVGLGWVR EGSNFGGHND
NALLKAGLGF TKQLTDNIDF RTDARYQVHG NKGNSGGSGN LGDWVISAGL NIALGPKAQA
PAPAYVAPAY VAPAPEPIAV TPPPVVAPVE PAPAPYVAPQ RATKQDRN
|
|---|
| |