| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0825 |
|---|
| Symbol | |
|---|
| ID | 4686530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 871599 |
|---|
| End bp | 873401 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639833822 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_981065 |
|---|
| Protein GI | 121603736 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCT CCAGCCAGAT TTCCAGCCTC CCGGCCGTCA CCATTGCCAC GGTGGACCAG
TTACGCGAGC GCATCCGCCG CAAGAGCAAG CTCAAGGGCC GGCAGGCCGA CGACGGATCG
CTTGAAGAAG TTCGTGCGCT GATCGGCGTT CGCCCGGCAG ACGGCCATCG CCGCGACCTG
CTGATCGAGC ATCTGCACCG GCTCAACGAC GCGTACCGCT GCCTGCACGA CCGCCACCTG
GTCGCGCTGG CCAGGGAGAT GAACATCCCC ATGGCCGAGG TGTATGAAGT GGCGACGTTC
TATCACCACT TTGAAGTCGT CAAGGGCGAC GCGAACGGCG ATGGACAAGC GCCCGGCCTG
ACAGTGCGGG TGTGCGACGG GCTGAGCTGC GAGATGGCCG GCGCGCAGGA TTTGCTGGCG
CGTCTGCCGG CCTTGCTGGG CGCGCAGGAC GTGCGGGTGA TTGCCGCGCC GTGCCTTGGC
CGCTGCGAAC AGGCGCCGGT GGCGGTGGTG CACCAGACGC CGGTGCCGTT TGCCACGCTT
GAATCCGTGG TTCAGGCATC AAATAGTGCT TCTGCGCAAT ATCCACGGGC GCAAGAAGCT
ATCAATTTCA TAGCCCCGGA TTGGGCGGAA AAAAGCATTC CCGAGCTGCC CGGCTACACC
GATTACGCCA CCTACCGCGC CCACGGCGGC TATGCGCTGG CGGCGTCGCT GGTGAACGGG
GAAGAGGACG CCGAACGCGT CCTTGCGGCC ATGGAAAATT CCGGCCTGCG CGGCCTGGGC
GGCGCGGGTT TCCCGGCGGG GCGCAAATGG CGCATCGTTC GCGGGCAGCC GGCGCCGCGC
CTGATGGCGG TGAATATCGA CGAGGGCGAG CCCGGCACCT TCAAGGACCG GGTTTACCTG
GAGCGCGACC CGCACCGTTT CCTCGAAGGC GTGCTGGTCG CCGCGCAGGT GGTCGGCATC
GAGGCCTGCT ACATCTATTT GCGCGACGAA TACCACGATT GCCGCGCGCT GTTGCAGGCC
GAAATCGCCA AGCTGCAGGC CGACCCGCCG TGCCCGCTGC CGCTGATCGA GCTGCGGCGC
GGCGCGGGCG CCTACATCTG CGGCGAAGAA TCGGCCATGA TCGAAAGCAT CGAGGGCAAG
CGCGGCGAAC CGCGCATGCG GCCGCCCTAC ATCGCCGAAG TCGGCCTGTT TGGCCGGCCG
ACGCTGGAGC ACAACTTCGA AACCCTGTAC TGGGTGCGCG ACATCGTGCA AAAAGGCCCG
CAGTGGTTCA GCAGCTTTGG CCGCAACGGC CGCAAGGGGC TGCGATCTTT CAGCGTCAGC
GGGCGGGTGA AGCTGCCGGG CGTCAAGCTG GCGCCGGCCG GCATCACGCT GCTGGAGTTG
ATTGACGAGT ATTGCGGCGG CATGGCGGAC GGCCACACGC TTTATGCCTA CCTGCCGGGC
GGCGCATCGG GCGGGATTTT TCCGGCCAGC CATGCCAATG TGCCGCTGGA CTTCGACACC
CTGCAGCCGC ATGGCGGTTT CATCGGCTCG GCCGCCGTCA TCGTGCTCGG CCAGCACGAC
AAGGCGCGCG ACGCGGCGCT GAACATGATG CGGTTTTTCG CCAGCGAGAG CTGCGGCCAG
TGCACGCCGT GCCGCGTCGG CACGGCGAAG GCGGCCAGGC TGATGCAAGC GCCCCGCTGG
GACAACGCCA CGCTGGAAGA CTTGAACATT GTGATGACCG ATGCGTCGAT TTGCGGCCTG
GGTCAGGCGG CGCCCAACCC GGTGCGCTGT GTGCAGAAAT ATTTTGCCCA TGAGGTGGTC
TGA
|
|---|
| Protein sequence | MNPSSQISSL PAVTIATVDQ LRERIRRKSK LKGRQADDGS LEEVRALIGV RPADGHRRDL
LIEHLHRLND AYRCLHDRHL VALAREMNIP MAEVYEVATF YHHFEVVKGD ANGDGQAPGL
TVRVCDGLSC EMAGAQDLLA RLPALLGAQD VRVIAAPCLG RCEQAPVAVV HQTPVPFATL
ESVVQASNSA SAQYPRAQEA INFIAPDWAE KSIPELPGYT DYATYRAHGG YALAASLVNG
EEDAERVLAA MENSGLRGLG GAGFPAGRKW RIVRGQPAPR LMAVNIDEGE PGTFKDRVYL
ERDPHRFLEG VLVAAQVVGI EACYIYLRDE YHDCRALLQA EIAKLQADPP CPLPLIELRR
GAGAYICGEE SAMIESIEGK RGEPRMRPPY IAEVGLFGRP TLEHNFETLY WVRDIVQKGP
QWFSSFGRNG RKGLRSFSVS GRVKLPGVKL APAGITLLEL IDEYCGGMAD GHTLYAYLPG
GASGGIFPAS HANVPLDFDT LQPHGGFIGS AAVIVLGQHD KARDAALNMM RFFASESCGQ
CTPCRVGTAK AARLMQAPRW DNATLEDLNI VMTDASICGL GQAAPNPVRC VQKYFAHEVV
|
|---|
| |